View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_14 (Length: 285)
Name: NF7308_low_14
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 14570747 - 14570879
Alignment:
| Q |
137 |
cgtacatctgtgttttactgtttcacatgtaagtattcataaataactcataacctgcaacacataactaccgcaattacctacaacaaatatcacctat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14570747 |
cgtacatctgtgttttactgtttcacatgtaagtattcataaataactcataacctgcaacacataactaccgcaattacctacaacaaatatcacctat |
14570846 |
T |
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| Q |
237 |
acaacaacatggcagcaaaacaaaaattgtttg |
269 |
Q |
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| T |
14570847 |
acaacaacatggcagcaaaacaaaaattgtttg |
14570879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 14570625 - 14570670
Alignment:
| Q |
15 |
cattaaaaaatactcaatcaaatcttacgaactatgtacaaacaaa |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14570625 |
cattaaaaaatactcaatcaaatcttacgaactatgtacaaacaaa |
14570670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 19782734 - 19782866
Alignment:
| Q |
137 |
cgtacatctgtgttttactgtttcacatgtaagtattcataaataactcataacctgcaacacataactaccgcaattacctacaacaaatatcacctat |
236 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19782734 |
cgtacatctgtgttttactgtttcgcatgtaagtattcataaatagctcataacctgcaacacataactactacaattacctacaacaaatatcacctat |
19782833 |
T |
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| Q |
237 |
acaacaacatggcagcaaaacaaaaattgtttg |
269 |
Q |
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|||||| ||||||||| |||||||||||||||| |
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| T |
19782834 |
acaacagcatggcagcgaaacaaaaattgtttg |
19782866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 19782612 - 19782657
Alignment:
| Q |
15 |
cattaaaaaatactcaatcaaatcttacgaactatgtacaaacaaa |
60 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19782612 |
cattaaaaaatactcaatcaattcttacgaactatgtacaaacaaa |
19782657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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