View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_16 (Length: 271)
Name: NF7308_low_16
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 8449061 - 8449303
Alignment:
| Q |
13 |
aatatcccggagtataaagagggaaagtcgtcaaaaagtgaatgacatatcgcactgtacggagcgaatatcaagcatacttccatttttaacgcaactt |
112 |
Q |
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| T |
8449061 |
aatatcctgaagtatacagagggaaagtcgtcaaaaagtgaatgacacatcgcattgtgcggagcgaatatcaagcatacttctatttttaacgcaactt |
8449160 |
T |
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| Q |
113 |
ttatcggtaaagttatttaaagttgatcattggtttaaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgtac |
212 |
Q |
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| T |
8449161 |
ttatcggtaaagttatttaaagttgatcattggtttaaagatttctttggctttctttaacagttcacacggtttcaaacttggatttatatgcatgtac |
8449260 |
T |
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| Q |
213 |
ttcgccatacatattcttcccgctcaaattgtgtcttctttct |
255 |
Q |
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| T |
8449261 |
ttcgtcatacatattcttcccgctcaaattgtgtcttctttct |
8449303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 8237170 - 8237319
Alignment:
| Q |
72 |
cggagcgaatatcaagcatacttccatttttaacgcaacttttatcggtaaagttatttaaagttgatcattggtttaaagatttctttggctttcttta |
171 |
Q |
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| T |
8237170 |
cggagcgaataacgaacatacttccatttttacaacagtttttcttgatgaagtttcttaaaattgatcgttggtttaaagatttcttcagttttgttta |
8237269 |
T |
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| Q |
172 |
acagttcacatggtttcaaacttggattcatatgcatgtacttcgccata |
221 |
Q |
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| T |
8237270 |
accactcacgtggtttcaaacttggattcatatgcatgtacttcaccata |
8237319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 255
Target Start/End: Original strand, 8233974 - 8234174
Alignment:
| Q |
51 |
tgaatgacatatcgcactgtacggagcgaatatcaagcatacttccatttttaacgcaa---cttttatcggtaaagttatttaaagttgatcattggtt |
147 |
Q |
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| T |
8233974 |
tgaatgacataccgcattgtacggagcgaataatgaacatacttccatttttacaacaatcactttta---gtaaagttctataaagttgatcattg--- |
8234067 |
T |
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| Q |
148 |
taaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgtacttcgccatacatattctt-cccgctcaaattgtgt |
246 |
Q |
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| T |
8234068 |
--aagttttctttgatattctttaacctttcacatggtctcaaacttggattcatttgcatgtgcttcaccatacttatttttgttaactcaaattgtgt |
8234165 |
T |
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| Q |
247 |
cttctttct |
255 |
Q |
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| T |
8234166 |
cttctttct |
8234174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 8244435 - 8244499
Alignment:
| Q |
146 |
tttaaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgta |
211 |
Q |
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| T |
8244435 |
tttaaagatttctttgattttcttttacc-ttcacatggtttcaaagttggattcatttgcatgta |
8244499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 8243809 - 8243944
Alignment:
| Q |
76 |
gcgaatatcaagcatacttccatttttaacgcaacttttatcggtaaagttatttaaagttgat-cattggtttaaagatttctttggctttctttaaca |
174 |
Q |
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| T |
8243809 |
gcgaataacgagcatacttccatttttaaaacaatctctttcagtaaagttctatcaagttgattcttttttttaaagatttctttgattttctgttacc |
8243908 |
T |
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| Q |
175 |
gttcacatggtttcaaacttggattcatatgcatgta |
211 |
Q |
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| T |
8243909 |
-ttcacatggtttcaaagttggattcatttgcatgta |
8243944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 8245960 - 8246049
Alignment:
| Q |
132 |
aagttgatcattggtttaaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgtacttcgccata |
221 |
Q |
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| T |
8245960 |
aagttgatcatcgttgttaagatttctttagtgttctttaatcgctcacatggtatcaaatttggaatcatttgcatgtacttcaccata |
8246049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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