View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_19 (Length: 238)
Name: NF7308_low_19
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 42821448 - 42821671
Alignment:
| Q |
3 |
aattctggtaagcttgacatcatgtttaaaaatgctggtatct---ccgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaaggg |
99 |
Q |
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| T |
42821448 |
aattatggtaagcttgacatcatgtttaacaatgctggtatctgatctgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaaggg |
42821547 |
T |
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| Q |
100 |
tatttgatgttaatgtttatggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgt |
199 |
Q |
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| T |
42821548 |
tatttgatgtaaatgtttatggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgt |
42821647 |
T |
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| Q |
200 |
tgctacaaaaattgctggtgaaac |
223 |
Q |
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| T |
42821648 |
tgctacaaaaattgctggtgaaac |
42821671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 42825085 - 42825304
Alignment:
| Q |
2 |
gaattctggtaagcttgacatcatgtttaaaaatgctggtatctccgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaagggta |
101 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42825085 |
gaattatggtaagcttgacatcatgtttaacaatgctggtatctctgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaagggta |
42825184 |
T |
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| Q |
102 |
tttgatgttaatgtttatggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgttg |
201 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | || ||||| ||||||||||||||||||||||||| |
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| T |
42825185 |
tttgatgtaaatgtttatggagctttcttgggtgcgaagcatgctgctagggtaatgataccaaataaaaaaggtgttattctttttactgcaagtgttg |
42825284 |
T |
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| Q |
202 |
ctacaaaaattgctggtgaa |
221 |
Q |
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||||| ||| |||||||||| |
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| T |
42825285 |
ctacagaaactgctggtgaa |
42825304 |
T |
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