View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_2 (Length: 2992)
Name: NF7308_low_2
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-46
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 14134042 - 14133946
Alignment:
| Q |
15 |
aatgatgtgattcaacaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggt |
111 |
Q |
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| T |
14134042 |
aatgatgtgattcaacaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggt |
14133946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 1541 - 1680
Target Start/End: Original strand, 15298577 - 15298716
Alignment:
| Q |
1541 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1640 |
Q |
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| T |
15298577 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtgagatgtatgctgaaaa |
15298676 |
T |
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| Q |
1641 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1680 |
Q |
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| T |
15298677 |
tggctaagctgccaaagccattttggggtgaagctgttca |
15298716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 1541 - 1680
Target Start/End: Original strand, 14176057 - 14176196
Alignment:
| Q |
1541 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1640 |
Q |
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| T |
14176057 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
14176156 |
T |
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| Q |
1641 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1680 |
Q |
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| T |
14176157 |
tggctaagctgccaaagccattttggggagaagctgttca |
14176196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 1541 - 1680
Target Start/End: Complemental strand, 28609820 - 28609681
Alignment:
| Q |
1541 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1640 |
Q |
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| T |
28609820 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
28609721 |
T |
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| Q |
1641 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1680 |
Q |
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| T |
28609720 |
tggctaagctgccaaagccattttggggagaagctgttca |
28609681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 2598 - 2771
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
| Q |
2598 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
2696 |
Q |
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| T |
28608794 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt |
28608696 |
T |
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| Q |
2697 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
2771 |
Q |
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| T |
28608695 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2598 - 2748
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
| Q |
2598 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
2696 |
Q |
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| T |
14177081 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
14177179 |
T |
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| Q |
2697 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta |
2748 |
Q |
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| T |
14177180 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta |
14177231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 2598 - 2771
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
| Q |
2598 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
2696 |
Q |
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| T |
12933811 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
12933909 |
T |
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| Q |
2697 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
2771 |
Q |
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| T |
12933910 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 1541 - 1680
Target Start/End: Original strand, 12932787 - 12932926
Alignment:
| Q |
1541 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1640 |
Q |
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| T |
12932787 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
12932886 |
T |
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| Q |
1641 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1680 |
Q |
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| T |
12932887 |
tggctaagctgccaaagccattttgggtagaagctgttca |
12932926 |
T |
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