View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7308_low_3 (Length: 609)

Name: NF7308_low_3
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7308_low_3
NF7308_low_3
[»] chr4 (9 HSPs)
chr4 (18-246)||(31030599-31030834)
chr4 (18-231)||(31020718-31020939)
chr4 (385-549)||(31030954-31031121)
chr4 (481-543)||(31021176-31021238)
chr4 (232-295)||(31020981-31021044)
chr4 (25-132)||(31496075-31496182)
chr4 (25-130)||(31501241-31501352)
chr4 (269-314)||(31030837-31030883)
chr4 (18-69)||(31488783-31488834)
[»] chr6 (3 HSPs)
chr6 (25-65)||(33060409-33060449)
chr6 (101-134)||(33403535-33403568)
chr6 (25-69)||(33412772-33412816)
[»] chr2 (1 HSPs)
chr2 (25-65)||(17437875-17437915)
[»] scaffold1749 (1 HSPs)
scaffold1749 (107-135)||(1076-1104)
[»] scaffold0428 (1 HSPs)
scaffold0428 (107-135)||(9837-9865)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 31030599 - 31030834
Alignment:
Q  18 agttgaagcgagtatcttcgcctctaaaggtgacaaacacattataataattcttcctccttggcaatgccataagagatgaagaagaggagttgctgct 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31030599 agttgaagcgagtatcttcgcctctaaaggtgacaaacacatcataataattcttcctccttggcaatgccataagagctgaagaagaggagttgctgct 31030698  T
Q  118 gctagccatctgaatatgctaaattgactatgaatactgagttcctatgaaattatcagtggtgct-------tctcaagtctcaactatatattattaa 210  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  31030699 gctagccatctgaatatgctaaattgattatgaatgctgagttcctatgaaattatcagtggtgcttctcaagtctcaagtctcaactatatattattaa 31030798  T
Q  211 aattcttatatattgtcatataaggacaaagcaatt 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  31030799 aattcttatatattgtcatataaggacaaagcaatt 31030834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 31020718 - 31020939
Alignment:
Q  18 agttgaagcgagtatcttcgcctctaaaggtgacaaacacattataataattcttcctccttggcaatgccataagagatgaagaagaggagttgctgct 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31020718 agttgaagcgagtatcttcgcctctaaaggtgacaaacacatcataataattcttcctccttggcaatgccataagagctgaagaagaggagttgctgct 31020817  T
Q  118 gctagccatctgaatatgctaaattgactatgaatactgagttcctatgaaattatcagtggtgct-------tctcaagtctcaactatatattattaa 210  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  31020818 gctagccatctgaatatgctaagttgattatgaatactgagttcctatgaaattatcagtggtgcttctcaagtctcaagtctcaactatatattattaa 31020917  T
Q  211 aattctt-atatattgtcatat 231  Q
    ||||||| |||||||| |||||    
T  31020918 aattcttaatatattgccatat 31020939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 385 - 549
Target Start/End: Original strand, 31030954 - 31031121
Alignment:
Q  385 gatatactaacttgtgttcttggcatttacctaaaaagacactaattaatacgacaaatattgagtaatttgttctagttattc-ttttttaaacaatag 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31030954 gatatactaacttgtgttcttggcatttacctaaaaagacactaattaatacgacaaatattgagtaatttgttctagttattctttttttaaacaatag 31031053  T
Q  484 taatttgttttagttggattaagaatataccacaatgaaaa--ttctgtgaatacagtaaaaggagta 549  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  31031054 taatttgttttagttggattaagaatataccacaatgaaaattttctgtgaatacagtaaaaggagta 31031121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 31021176 - 31021238
Alignment:
Q  481 tagtaatttgttttagttggattaagaatataccacaatgaaaattctgtgaatacagtaaaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31021176 tagtaatttgttttagttggattaagaatataccacaatgaaaattctgtgaatacagtaaaa 31021238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 31020981 - 31021044
Alignment:
Q  232 aaggacaaagcaatttcataattcgatcctcaaagtatataccccactcattttacaaagcaaa 295  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  31020981 aaggacaaagcaatttcattattcgatccgcaaagtatataccccactcattttacaaagcaaa 31021044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 31496182 - 31496075
Alignment:
Q  25 gcgagtatcttcgcctctaaaggtgacaaacacattataataattcttcctccttggcaatgccataagagatgaagaagaggagttgctgctgctagcc 124  Q
    |||||| || || |||||||||||||||||||| | ||||| |||  ||||||||||| ||| ||  |||| |||||||| |||||||||||||||||||    
T  31496182 gcgagtgtcctcacctctaaaggtgacaaacacgtcataatgattgctcctccttggcgatgtcactagagctgaagaagtggagttgctgctgctagcc 31496083  T
Q  125 atctgaat 132  Q
    ||||||||    
T  31496082 atctgaat 31496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 31501352 - 31501241
Alignment:
Q  25 gcgagtatcttcgcctctaaaggtgacaaacacattataataattcttcctccttggcaat------gccataagagatgaagaagaggagttgctgctg 118  Q
    |||||| ||||| |||||||| ||||||||| ||| ||||||||||||||||||||||| |      | || |||||  ||||||||||||||| |||||    
T  31501352 gcgagtgtcttcacctctaaaagtgacaaacgcatcataataattcttcctccttggcagtgtcacagtcacaagagccgaagaagaggagttgttgctg 31501253  T
Q  119 ctagccatctga 130  Q
    ||||||||||||    
T  31501252 ctagccatctga 31501241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 31030837 - 31030883
Alignment:
Q  269 tataccccactcattttacaaagc-aaataaattggacaaaaagaga 314  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31030837 tataccccactcattttacaaagcaaaataaattggacaaaaagaga 31030883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 31488834 - 31488783
Alignment:
Q  18 agttgaagcgagtatcttcgcctctaaaggtgacaaacacattataataatt 69  Q
    ||||||||||||||||||| ||||| |||||||||||||| | |||||||||    
T  31488834 agttgaagcgagtatcttcacctctgaaggtgacaaacacgtcataataatt 31488783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 33060409 - 33060449
Alignment:
Q  25 gcgagtatcttcgcctctaaaggtgacaaacacattataat 65  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  33060409 gcgagtatcttcacctctaaaggtgacaaacacatcataat 33060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 33403535 - 33403568
Alignment:
Q  101 gaagaggagttgctgctgctagccatctgaatat 134  Q
    ||||| ||||||||||||||||||||||||||||    
T  33403535 gaagacgagttgctgctgctagccatctgaatat 33403568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 33412772 - 33412816
Alignment:
Q  25 gcgagtatcttcgcctctaaaggtgacaaacacattataataatt 69  Q
    |||||| ||||| ||||| |||||||||||||||| |||||||||    
T  33412772 gcgagtgtcttcacctctgaaggtgacaaacacatcataataatt 33412816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 17437915 - 17437875
Alignment:
Q  25 gcgagtatcttcgcctctaaaggtgacaaacacattataat 65  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  17437915 gcgagtatcttcacctctaaaggtgacaaacacatcataat 17437875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 1076 - 1104
Alignment:
Q  107 gagttgctgctgctagccatctgaatatg 135  Q
    |||||||||||||||||||||||||||||    
T  1076 gagttgctgctgctagccatctgaatatg 1104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 9837 - 9865
Alignment:
Q  107 gagttgctgctgctagccatctgaatatg 135  Q
    |||||||||||||||||||||||||||||    
T  9837 gagttgctgctgctagccatctgaatatg 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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