View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_6 (Length: 476)
Name: NF7308_low_6
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 38292415 - 38292868
Alignment:
| Q |
1 |
ccatttcatcaatctacaaggtattattattgaaaatgatatcattatagattttcaaattacccaaatcgatgcatgccaaatcaaccaacaatccttt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38292415 |
ccatttcatcaatctacatggtattattattgaa--tgatatcattatagattttcaaattacccaaatcgatgcatgccaaatcaaccaccaatccttt |
38292512 |
T |
|
| Q |
101 |
ctaagtttcatgtttctcgcctccccacttcaactttcaaaatgaacaaacaaatt--gaggggtaatgatattcattagggacattattttggaccaca |
198 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38292513 |
ctaagtttcatgttcctcgcctccccacttcaactttcaaaatgaacaaacaaattttgaggggtaatgatattcattaggcacattattttggaccaca |
38292612 |
T |
|
| Q |
199 |
aaagtttccacgcacccatcacaaaagacacaatttaaatttgccaccaatggaatactatttcttctaacaagatctctcgttgggatacgattatgaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38292613 |
aaagtttccacgcacccatcacaaaagacacaatttaaatttgccaccaatggaatactatttcttctaacaagatctctcgttgggatacgattatgaa |
38292712 |
T |
|
| Q |
299 |
atagcttccaagaaaaaaccaaaaccttactattttgtttgtagaccatccctaagtaacttttcgttactccatttgtaccaaataaaacaggttaacc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38292713 |
atagcttccaagaaaaaaccaaaaccttactattttgtttgtagaccatccctaagtaacttttcgttactccatttgtaccaaataaaacaggttaacc |
38292812 |
T |
|
| Q |
399 |
actttttgtcactttcatgtttaaccatgacataaatactcatattcatatacgaa |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38292813 |
actttttgtcactttcatgtttaaccatgacataaatactcatattcatatacgaa |
38292868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 13854166 - 13854199
Alignment:
| Q |
120 |
cctccccacttcaactttcaaaatgaacaaacaa |
153 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
13854166 |
cctccccactccaactttcaaaatgaacaaacaa |
13854199 |
T |
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