View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_7 (Length: 420)
Name: NF7308_low_7
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 43814899 - 43814511
Alignment:
| Q |
16 |
atagtgacatatagcaagcgaactgatcccatgatcctctccagctcagagcccaaaggaactaaagccatcatgttgaagagaacatgaagcagtgaac |
115 |
Q |
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| T |
43814899 |
atagtgacatatagcaagcgaactgatcccatgatcctctccagctcagagcccaaaggaactaaagccatcatattgaagagaacatgaagcagtgaac |
43814800 |
T |
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| Q |
116 |
catggaaaagaatggcagtataaatcctgtaaactgcaaaaaacaaagcactccgtcactaaattcaagcaaattgtacaaaccaatagcacaagattca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43814799 |
catggaaaagaatggcagtataaatcctgtaaactgcaaaaaacaaagcactccgtcactaaattcaagcaaattctacaaaccaatagcacaagattca |
43814700 |
T |
|
| Q |
216 |
aaaatattcagaaaagatgctttttggatatagctactcaagacaattgaggtgctagctcagtggtcacagcttagccttataacctcaagatacagta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43814699 |
aaaatattcagaaaagatgctttttggatatagctactcaagacaattgaggtgctagctcagtggtcacagcttagccttataacctcaagatacagta |
43814600 |
T |
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| Q |
316 |
ttcaaaaccccgaagttgtaaaatggtcattagcccactaatgttatataagacaccgaagaaaggcagatggttcaggggtattgttg |
404 |
Q |
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| T |
43814599 |
ttcaaaaccccgaagttgtaaaatggtcattagcccactaatgttatataagacaccgaagaaaggcagatggttcaggggtattgttg |
43814511 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 50892219 - 50892262
Alignment:
| Q |
264 |
gaggtgctagctcagtggtcacagcttagccttataacctcaag |
307 |
Q |
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| T |
50892219 |
gaggtgctagctcagtggtaagagcttagccttgtaacctcaag |
50892262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 31584869 - 31584923
Alignment:
| Q |
253 |
tcaagacaattgaggtgctagctcagtggtcacagcttagccttataacctcaag |
307 |
Q |
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|||| |||||||||||||||||||| |||| | |||||||| || |||||||||| |
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| T |
31584869 |
tcaatacaattgaggtgctagctcaatggtaagagcttagcattgtaacctcaag |
31584923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 36198988 - 36198938
Alignment:
| Q |
257 |
gacaattgaggtgctagctcagtggtcacagcttagccttataacctcaag |
307 |
Q |
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|||| |||||||||||||| |||||| | ||||||||||| |||||||||| |
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| T |
36198988 |
gacagttgaggtgctagcttagtggtaagagcttagccttgtaacctcaag |
36198938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 37531169 - 37531213
Alignment:
| Q |
262 |
ttgaggtgctagctcagtggtcacagcttagccttataacctcaa |
306 |
Q |
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||||||||||||||||||||| | || |||||||| ||||||||| |
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| T |
37531169 |
ttgaggtgctagctcagtggtaagagtttagccttgtaacctcaa |
37531213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 32735013 - 32734957
Alignment:
| Q |
256 |
agacaattgaggtgctagctcagtggtcacagcttagccttataacctcaagataca |
312 |
Q |
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||||| ||||||||||||||||| ||| ||||||||||| |||||||||| |||| |
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| T |
32735013 |
agacacttgaggtgctagctcagcggtgggagcttagccttctaacctcaaggtaca |
32734957 |
T |
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