View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7308_low_9 (Length: 367)

Name: NF7308_low_9
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7308_low_9
NF7308_low_9
[»] chr7 (3 HSPs)
chr7 (1-367)||(23637017-23637383)
chr7 (14-45)||(25956307-25956338)
chr7 (14-48)||(46279041-46279075)
[»] chr5 (4 HSPs)
chr5 (14-48)||(5943896-5943930)
chr5 (14-45)||(15485434-15485465)
chr5 (14-45)||(32340351-32340382)
chr5 (13-45)||(36895448-36895480)
[»] chr4 (7 HSPs)
chr4 (1-45)||(21344847-21344891)
chr4 (5-45)||(29195125-29195165)
chr4 (14-45)||(31141358-31141389)
chr4 (14-45)||(37980162-37980193)
chr4 (14-45)||(38206140-38206171)
chr4 (14-45)||(56409981-56410012)
chr4 (14-44)||(5998702-5998732)
[»] chr8 (3 HSPs)
chr8 (14-45)||(5438453-5438484)
chr8 (14-45)||(40136977-40137008)
chr8 (15-45)||(9126599-9126629)
[»] chr6 (2 HSPs)
chr6 (14-45)||(6384017-6384048)
chr6 (14-48)||(9862180-9862214)
[»] chr3 (6 HSPs)
chr3 (14-45)||(18316513-18316544)
chr3 (14-45)||(35623281-35623312)
chr3 (14-45)||(42799762-42799793)
chr3 (14-45)||(53863882-53863913)
chr3 (13-43)||(37944811-37944841)
chr3 (14-48)||(42430361-42430395)
[»] chr2 (4 HSPs)
chr2 (14-45)||(6099533-6099564)
chr2 (14-48)||(26176340-26176374)
chr2 (14-44)||(43964003-43964033)
chr2 (16-44)||(7250260-7250288)
[»] chr1 (7 HSPs)
chr1 (14-45)||(37047015-37047046)
chr1 (14-45)||(38939232-38939263)
chr1 (14-48)||(9926291-9926325)
chr1 (14-48)||(19480554-19480588)
chr1 (14-48)||(24216998-24217032)
chr1 (16-45)||(47360530-47360559)
chr1 (1-45)||(15581143-15581187)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 23637017 - 23637383
Alignment:
Q  1 aattgaacgtgcaaccttgagaggagcacactccaaggtcccaagtcatgaagccaactgaagtggctttagataagacattacttattactgaatgcat 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23637017 aattgaacgtgcgaccttgagaggagcacactccaaggtcccaagtcatgaagccaactgaagtgggtttagataagacattatttattactgaatgcat 23637116  T
Q  101 acaattaagggcttaaaatatagagtcaaaaattcaactaacaaaaagtggcgattacctgtgctgcaagtcgtgttcttactaaatccaaaggatataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23637117 acaattaagggcttaaaatatagagtcaaaaattcaactaacaaaaagtggcaattacctgtgctgcaagtcgtgttcttactaaatccaaaggatataa 23637216  T
Q  201 ggtcgaggcagctgtcatacctgacaaaccaccactgacaaagtgcacaaaaacatcactaccagcctttgctctatgattctcccccagaacagaatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23637217 ggtcgaggcagctgtcatacctgacaaaccaccactgacaaagtgcacaaagacatcactaccagcctttgctctatgattctcccccagaacagaatgc 23637316  T
Q  301 aatagctggagnnnnnnnngactacgagtttgattcaaacttaaaaaacttaagcaccaaattctga 367  Q
    |||||||||||        ||||| |||||||||||||||||||  |||||||||||||||||||||    
T  23637317 aatagctggagaaaaaaaagactatgagtttgattcaaacttaaggaacttaagcaccaaattctga 23637383  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 25956307 - 25956338
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  25956307 accttgagaggagcacactccaaggtcccaag 25956338  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 46279075 - 46279041
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  46279075 accttgagaggagcacactccaaggtccaaagtca 46279041  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 5943896 - 5943930
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||||||||||||||||||||    
T  5943896 accttgagaggagcacactccaaggtcccaagtca 5943930  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 15485434 - 15485465
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  15485434 accttgagaggagcacactccaaggtcccaag 15485465  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 32340351 - 32340382
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  32340351 accttgagaggagcacactccaaggtcccaag 32340382  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 36895480 - 36895448
Alignment:
Q  13 aaccttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||| |||||||    
T  36895480 aaccttgagaggagcacactccaagatcccaag 36895448  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21344891 - 21344847
Alignment:
Q  1 aattgaacgtgcaaccttgagaggagcacactccaaggtcccaag 45  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||    
T  21344891 aattgaacatgagaccttgagaggagcacactccaaggtcccaag 21344847  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29195165 - 29195125
Alignment:
Q  5 gaacgtgcaaccttgagaggagcacactccaaggtcccaag 45  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  29195165 gaacttgcgaccttgagaggagcacactccaaggtcccaag 29195125  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 31141358 - 31141389
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  31141358 accttgagaggagcacactccaaggtcccaag 31141389  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 37980162 - 37980193
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  37980162 accttgagaggagcacactccaaggtcccaag 37980193  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 38206140 - 38206171
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  38206140 accttgagaggagcacactccaaggtcccaag 38206171  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 56410012 - 56409981
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  56410012 accttgagaggagcacactccaaggtcccaag 56409981  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 5998702 - 5998732
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaa 44  Q
    |||||||||||||||||||||||||||||||    
T  5998702 accttgagaggagcacactccaaggtcccaa 5998732  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 5438453 - 5438484
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  5438453 accttgagaggagcacactccaaggtcccaag 5438484  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 40136977 - 40137008
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  40136977 accttgagaggagcacactccaaggtcccaag 40137008  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 9126599 - 9126629
Alignment:
Q  15 ccttgagaggagcacactccaaggtcccaag 45  Q
    |||||||||||||||||||||||||||||||    
T  9126599 ccttgagaggagcacactccaaggtcccaag 9126629  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 6384017 - 6384048
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  6384017 accttgagaggagcacactccaaggtcccaag 6384048  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 9862180 - 9862214
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  9862180 accttgaaaggagcacactccaaggtcccaagtca 9862214  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 18316513 - 18316544
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  18316513 accttgagaggagcacactccaaggtcccaag 18316544  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 35623281 - 35623312
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  35623281 accttgagaggagcacactccaaggtcccaag 35623312  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 42799762 - 42799793
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  42799762 accttgagaggagcacactccaaggtcccaag 42799793  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 53863882 - 53863913
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  53863882 accttgagaggagcacactccaaggtcccaag 53863913  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 37944811 - 37944841
Alignment:
Q  13 aaccttgagaggagcacactccaaggtccca 43  Q
    |||||||||||||||||||||||||||||||    
T  37944811 aaccttgagaggagcacactccaaggtccca 37944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 42430395 - 42430361
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  42430395 accttgagaggagcacactccaagatcccaagtca 42430361  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 6099533 - 6099564
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  6099533 accttgagaggagcacactccaaggtcccaag 6099564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 26176340 - 26176374
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||| ||||||||||||||||    
T  26176340 accttgagaggagcacaccccaaggtcccaagtca 26176374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 43964003 - 43964033
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaa 44  Q
    |||||||||||||||||||||||||||||||    
T  43964003 accttgagaggagcacactccaaggtcccaa 43964033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 7250288 - 7250260
Alignment:
Q  16 cttgagaggagcacactccaaggtcccaa 44  Q
    |||||||||||||||||||||||||||||    
T  7250288 cttgagaggagcacactccaaggtcccaa 7250260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 37047046 - 37047015
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  37047046 accttgagaggagcacactccaaggtcccaag 37047015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 38939263 - 38939232
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||||    
T  38939263 accttgagaggagcacactccaaggtcccaag 38939232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 9926291 - 9926325
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  9926291 accttgagaggagcacactccaagatcccaagtca 9926325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 19480588 - 19480554
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  19480588 accttgagaggagcacactccaagatcccaagtca 19480554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 24217032 - 24216998
Alignment:
Q  14 accttgagaggagcacactccaaggtcccaagtca 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  24217032 accttgagaggagcacactccaagatcccaagtca 24216998  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 47360530 - 47360559
Alignment:
Q  16 cttgagaggagcacactccaaggtcccaag 45  Q
    ||||||||||||||||||||||||||||||    
T  47360530 cttgagaggagcacactccaaggtcccaag 47360559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15581143 - 15581187
Alignment:
Q  1 aattgaacgtgcaaccttgagaggagcacactccaaggtcccaag 45  Q
    |||||||| ||  ||||| ||||||||||||||||||||||||||    
T  15581143 aattgaacctgagacctttagaggagcacactccaaggtcccaag 15581187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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