View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_12 (Length: 414)
Name: NF7309_high_12
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_12 |
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| [»] scaffold0075 (1 HSPs) |
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Alignment Details
Target: scaffold0075 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 15482 - 15857
Alignment:
| Q |
20 |
ctatggtcaatggcaccataatcaataagccaaaagccaaatattggatgatgtagataaaagaaagaaacaacactatgattacctgcactagaatgag |
119 |
Q |
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| T |
15482 |
ctatggtcaatggcaccataatcaataagccaaaagccaaatattggatgatgtagataaaagaaagaaacaacactatgattacctgcactagaatgag |
15581 |
T |
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| Q |
120 |
tatgagattggcctgaagtaagcacaggtgagacactgacatgattggaaacagaaggagtggaagtttaagcaacgaaatttgattgttgaagcaagga |
219 |
Q |
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| T |
15582 |
tatgagattggtctgaagtaagcacaggtgagacactgacatgattggaaacagaaggagtggaagtttaagcaacgaaatttgattgttgaagcaagga |
15681 |
T |
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| Q |
220 |
tacatgttgttcaaacttcttttgagataaaccagtactgagactatttacgaaaccatcagtgttgctggtaaatgaaggagctgcactattttcaaaa |
319 |
Q |
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| T |
15682 |
tacatgttgttcaaacttcttttgagataaaccagtactgagactatttacgaaaccatcagtgttgctggtaaatgaaggagctgcactattttcaaaa |
15781 |
T |
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| Q |
320 |
gtagaagcatttgcagaagaatgttgattattaaagctaggatgaccatgtttttgatagcaaaattcaactgtga |
395 |
Q |
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| T |
15782 |
gtagaagcatttgcagaagaatgttgattattaaagctaggatgaccatgtttttgataggaaaattcaactgtga |
15857 |
T |
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