View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7309_high_13 (Length: 411)
Name: NF7309_high_13
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 2329396 - 2329773
Alignment:
| Q |
19 |
atttggaccctcctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacggtggagct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329396 |
atttggaccctcctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacggtggagct |
2329495 |
T |
|
| Q |
119 |
gnnnnnnngtgccgaagagcgagttacattaagatgggtaagctcacaattttgatgttctttatatatattttctttataacagccaagtgatcctgta |
218 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329496 |
gaaaaaaagtgctgaagagcgagttacattaagatgggtaagctcacaattttgatgttccttacatatattttctttataacagccaagtgatcctgta |
2329595 |
T |
|
| Q |
219 |
agttaagactaatttctgcccgtcacttcagaaaaatagataatttttgtcgttattctcgttgggaataatttgatatgagagaaaattttgattggaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2329596 |
agttaagactaatttctgcccgtcacttcagaaaaatagataatttttgtcgttattctcgttgggaataatttgatatgagagaaaattgtgattggaa |
2329695 |
T |
|
| Q |
319 |
tagattttgtaagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttcat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329696 |
tagattttgtaagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttcat |
2329773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 47775204 - 47775399
Alignment:
| Q |
30 |
cctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacg------------gtggagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47775204 |
cctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacgggccgtcgccctgtggagc |
47775303 |
T |
|
| Q |
118 |
tgnnnnnnngtgccgaagagcgagttacattaagatgggtaagctcaca----------attttgatgttctttatatatattttctttataacag |
203 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47775304 |
tgaaaaaaagtgctgaagagcgagttacattaagatgggtaagctcacaatttgttcttattttgatgttctttacatatattttctttataacag |
47775399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 47775602 - 47775703
Alignment:
| Q |
296 |
atgagagaaaattttgattggaatagatttt-gtaagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttc |
394 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47775602 |
atgagagaaaattgtgattggaatagatttttgtaagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttc |
47775701 |
T |
|
| Q |
395 |
at |
396 |
Q |
| |
|
|| |
|
|
| T |
47775702 |
at |
47775703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 47775462 - 47775561
Alignment:
| Q |
200 |
acagccaagtgatcctgtaagttaagactaatttctgcccgtcacttcagaaaaatagataatttttgtcgttattctcgttgggaataatttgatatga |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47775462 |
acagccaagtgatcctgtaagttaagactaatttctgcc-gtcacttcacaaaaatagataatttttgtcgttattctcgttgggaataatttgatatga |
47775560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University