View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_15 (Length: 398)
Name: NF7309_high_15
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 27693279 - 27692902
Alignment:
| Q |
1 |
tttccacatatttaaagctaaactagtcttccataaattagtatattctcgttgctactcttgagtttaaacaataaattcataattatgaacaacaaca |
100 |
Q |
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| T |
27693279 |
tttccacatatttaaagctaaactagtcttccataaattagtatattctcgttgctactcttgagtttaaacaataaattcataattatgaacaacaaca |
27693180 |
T |
|
| Q |
101 |
ttgttaaacctgtgaaaaagccgccttaaaatttaacactgaaccccaaattatggttcttatgtcagtcagatgttgtttaatatgttacgtgtgcttg |
200 |
Q |
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| T |
27693179 |
ttgttaaacctgtgaaaaagccgccttaaaatttaacaccgaaccccaaattatggttcttatgtcagtcagatgttgtttaatatgttacgtgtgcttg |
27693080 |
T |
|
| Q |
201 |
atgtttggattatgttttaccatttgaaagcttctcaattgaaatatgcatttggttaccaagcaattttatggaagttcacttgcacttcttaaggctt |
300 |
Q |
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| T |
27693079 |
atgtttggattatgttttaccatttgaaagcttctcaattgaaatatgcatttggttaccaagcaattttatggaagttcacttgcacttcttaaggctt |
27692980 |
T |
|
| Q |
301 |
aaacgtgaataatgataatgcgaggctatgaataattctgttttttggtgcattataagaagataattgtgataagat |
378 |
Q |
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| T |
27692979 |
aaacgtgaataatgataatgcgaggctatgaataattctgttttttggtgcattataagaagataattgtaataagat |
27692902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 14766382 - 14766437
Alignment:
| Q |
202 |
tgtttggattatgttttaccatttgaaagcttctcaattgaaatatgcatttggtt |
257 |
Q |
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| T |
14766382 |
tgtttggattatgttctaccttacgagagcttctcaattgaaatatgcatttggtt |
14766437 |
T |
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