View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_high_2 (Length: 815)

Name: NF7309_high_2
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_high_2
NF7309_high_2
[»] chr5 (5 HSPs)
chr5 (1-137)||(40562783-40562919)
chr5 (320-432)||(40563571-40563685)
chr5 (696-797)||(40563952-40564053)
chr5 (502-610)||(40563759-40563867)
chr5 (132-203)||(40562953-40563024)
[»] chr7 (1 HSPs)
chr7 (510-610)||(30259936-30260036)
[»] chr1 (3 HSPs)
chr1 (572-610)||(30798856-30798894)
chr1 (531-610)||(47092966-47093045)
chr1 (572-609)||(47242679-47242716)
[»] chr6 (2 HSPs)
chr6 (572-603)||(10552746-10552777)
chr6 (572-610)||(27824779-27824817)
[»] chr3 (2 HSPs)
chr3 (499-610)||(44000224-44000335)
chr3 (572-610)||(41538173-41538211)
[»] scaffold0062 (1 HSPs)
scaffold0062 (572-610)||(3724-3762)
[»] chr8 (3 HSPs)
chr8 (572-610)||(14958921-14958959)
chr8 (572-610)||(18216754-18216792)
chr8 (572-610)||(28746285-28746323)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 40562783 - 40562919
Alignment:
Q  1 ttttaatgtgtttatttagatattttcttataaaggaaatcaaataaaaatgagactaaattatagatgagagagaacgggaaagcgattggtggacatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40562783 ttttaatgtgtttatttagatattttcttataaaggaaatcaaataaaaattagactaaattatagatgagagagaacgggaaagcgattggtggacatg 40562882  T
Q  101 tctataataatagagtgctgtatgaaataagttacaa 137  Q
    |||||||||||||||||||||||||||||| ||||||    
T  40562883 tctataataatagagtgctgtatgaaataaattacaa 40562919  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 320 - 432
Target Start/End: Original strand, 40563571 - 40563685
Alignment:
Q  320 gcaagtggaggagagagttgatttatt--agaggaaacttataccaataagtaattgataattgataaattaatggattgaatcaatgttgtgtttgatg 417  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40563571 gcaagtggaggagagagttgatttattttagaggaaacttataccaataagtaattgataattgataaattaatggattgaatcaatggtgtgtttgatg 40563670  T
Q  418 tgctacaaaataaag 432  Q
    |||||||||||||||    
T  40563671 tgctacaaaataaag 40563685  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 696 - 797
Target Start/End: Original strand, 40563952 - 40564053
Alignment:
Q  696 aagcacactaatattatttgataaagagtaactgaaggttaataaactagtagatagtggagcacataatagataaattcgtttatagttgataattaat 795  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40563952 aagcacactaatattatttgataaagagtaactgaaggttaataaactagtagatagtggagcacataatagataaattcgtttatagttaataattaat 40564051  T
Q  796 ag 797  Q
    ||    
T  40564052 ag 40564053  T

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Target: chr5; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 502 - 610
Target Start/End: Original strand, 40563759 - 40563867
Alignment:
Q  502 taaactacatcacaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaat 601  Q
    ||||| ||||||||||||||||||  | | ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40563759 taaaccacatcacaactttttataccacgcataagttgtctgaaataagaaaatcattttttgttcattgaaaatcgtataagatcaaaaattattcaat 40563858  T
Q  602 atcataaaa 610  Q
    |||||||||    
T  40563859 atcataaaa 40563867  T

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Target: chr5; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 40562953 - 40563024
Alignment:
Q  132 ttacaatttttatggttgtgttcattcttccgtcaaaatgttcgttccatgatgttgatgttcaactaaggg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40562953 ttacaatttttatggttgtgttcattcttccgtcaaaatgttcgttccatgatgttgatgttcaactaaggg 40563024  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 610
Target Start/End: Original strand, 30259936 - 30260036
Alignment:
Q  510 atcacaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaa 609  Q
    ||||||||||||||| | |  || ||||||| | |||||| ||| | ||||||| |||||  ||| ||||||||||||||||||||||||||||||||||    
T  30259936 atcacaactttttatcttacttacaagttgtctaaaatatcaaattaattttttattcatcaaaactcgtataagatcaaaaattattcaatatcataaa 30260035  T
Q  610 a 610  Q
    |    
T  30260036 a 30260036  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 30798856 - 30798894
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30798856 aaaatcgtataagaccaaaaattattcaatatcataaaa 30798894  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 610
Target Start/End: Original strand, 47092966 - 47093045
Alignment:
Q  531 tataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    |||||||| ||| |||||  ||||| ||||||||||||   |||||||||||||   |||||||||||||||| ||||||    
T  47092966 tataagttatttaaaatacaaaaataattttttgttcacaaaaaatcgtataaggcaaaaaattattcaatattataaaa 47093045  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 609
Target Start/End: Original strand, 47242679 - 47242716
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaa 609  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  47242679 aaaattgtataagatcaaaaattattcaatatcgtaaa 47242716  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 603
Target Start/End: Complemental strand, 10552777 - 10552746
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatat 603  Q
    ||||||||||||||||||||||||||||||||    
T  10552777 aaaatcgtataagatcaaaaattattcaatat 10552746  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 27824779 - 27824817
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  27824779 aaaatcatataagatcaaaaattattcaataccataaaa 27824817  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 610
Target Start/End: Complemental strand, 44000335 - 44000224
Alignment:
Q  499 cactaaactacatcacaactttttatataatgtataagttgtttgaaatatgaaaattattttttgttcattgaaaatcgtataagatcaaaaattattc 598  Q
    |||||||| ||||||||| ||||| |   | ||| ||||| | |||||||  |||||  |||||||| ||   |||||||||||||| ||||||||||||    
T  44000335 cactaaaccacatcacaattttttgtcccacgtacaagttatctgaaatacaaaaatagttttttgtccaccaaaaatcgtataagaccaaaaattattc 44000236  T
Q  599 aatatcataaaa 610  Q
    |||| |||||||    
T  44000235 aataccataaaa 44000224  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 41538173 - 41538211
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  41538173 aaaatcgtataaaatcaaaaatcattcaatatcataaaa 41538211  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 3724 - 3762
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  3724 aaaatcatataagataaaaaattattcaatatcataaaa 3762  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 610
Target Start/End: Complemental strand, 14958959 - 14958921
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  14958959 aaaatcgtataagatcaaaaatgatttaatatcataaaa 14958921  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 18216754 - 18216792
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  18216754 aaaattgtataagatcaaaaattattcaataccataaaa 18216792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 610
Target Start/End: Complemental strand, 28746323 - 28746285
Alignment:
Q  572 aaaatcgtataagatcaaaaattattcaatatcataaaa 610  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  28746323 aaaatcgtacaagatcaaaaattattcaatgtcataaaa 28746285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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