View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_20 (Length: 335)
Name: NF7309_high_20
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 51402389 - 51402710
Alignment:
| Q |
1 |
aagcgatctgaataatcttggtggtgctgccgcgacaacatggcgacacctaatgtgacatgccctgcaccgatgaaagccacgtctaatggtgctttcc |
100 |
Q |
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| T |
51402389 |
aagcgatctgaataatcttggtggtgctgccgcgacaacatggcgacgcctaatgtgacatgtcctgcaccgatgaaagccacgtctaatggtgctttcc |
51402488 |
T |
|
| Q |
101 |
aacacgaaaatcctctcgattatgcacttccgttgttgattcttcagatatgtgtggttgtcacgttcactagatgtattgcatacctttgcaaaccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402489 |
aacacgaaaatcctctcgattatgcacttccgttgttgattcttcagatatgtgtggttgtcacgttcactagatgtattgcatacctttgcaaaccact |
51402588 |
T |
|
| Q |
201 |
caaacaacctcgagtcattgcagaaatcattgtgagttttcgtcctttgtattgttgttttatccttgaaagtcccttaatttgatggttatagtttata |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402589 |
caaacaacctcgagtcattgcagaaatcattgtaagttttcgtcctttgtattgttgttttatccttgaaagtcccttaatttgatggttatagtttata |
51402688 |
T |
|
| Q |
301 |
tttgagtttccatgcaataagt |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
51402689 |
tttgagtttccatgcaataagt |
51402710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 29984409 - 29984244
Alignment:
| Q |
68 |
caccgatgaaagccacgtctaatggtgctttccaacacgaaaatcctctcgattatgcacttccgttgttgattcttcagatatgtgtggttgtcacgtt |
167 |
Q |
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|||| ||||| ||||| |||||||| || || ||||| |||||||| | |||||||||||||| || || ||| | ||||||||| |||| ||| | || |
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| T |
29984409 |
caccaatgaaggccacttctaatggggcatttcaacatgaaaatcccatggattatgcacttcccttattaattgtacagatatgtttggtggtcgcttt |
29984310 |
T |
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| Q |
168 |
cactagatgtattgcatacctttgcaaaccactcaaacaacctcgagtcattgcagaaatcattgt |
233 |
Q |
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|| ||| ||||||| |||||||| || || | ||||||| |||| ||||||||| ||||||| |
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| T |
29984309 |
tacaagactcattgcatttctttgcaagcctcttagacaacctagagttattgcagaagtcattgt |
29984244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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