View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7309_high_27 (Length: 254)
Name: NF7309_high_27
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_27 |
 | |
|
| [»] scaffold0340 (1 HSPs) |
| | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0132 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 39365362 - 39365140
Alignment:
| Q |
15 |
tataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39365362 |
tataaaggaagtggaaatttttggtgtggttaaaattagtaatagcaaagccatatactatgacatcttggtaattcttaattatgtcaatcatgtatta |
39365263 |
T |
|
| Q |
115 |
tttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatacat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| |
|
|
| T |
39365262 |
tttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttggactctaatacat |
39365163 |
T |
|
| Q |
214 |
ggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39365162 |
ggttaatgtttgatcgtttaaag |
39365140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 44431710 - 44431487
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
44431710 |
aatataaaggaagtgaaattttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
44431611 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| |||||||| |
|
|
| T |
44431610 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgcggttgtactttactatgttgactttcatatcattagactctaatac |
44431511 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaa |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44431510 |
atggttaatgtttgatcgtttaaa |
44431487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 46295086 - 46295310
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
46295086 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttgataattcttggttatgccaatcatgtat |
46295185 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||| |||||| ||||||| | |||||| |
|
|
| T |
46295186 |
tatttatgtgcttcattatgtatgacatgtattagtttttcatctgacaaatgtggttgtactttactatgctgactttcataccgttagactataatac |
46295285 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46295286 |
atggttaatgtttgatcgtttaaag |
46295310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 16835026 - 16835250
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16835026 |
aatataaaggaagtagaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttgggtatgtcaatcatgtat |
16835125 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||||| | |||||||| |
|
|
| T |
16835126 |
tatttatgtgcttcattatgtaagacatgtattagttttccatctgacaaatgtggttgtactttattatgctgactttcatatcgttgaactctaatac |
16835225 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
16835226 |
atggttaatgtttgatcgtttaaag |
16835250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 1799355 - 1799587
Alignment:
| Q |
15 |
tataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgac----------atcttggtaattcttgattatgtcaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||| |
|
|
| T |
1799355 |
tataaaggaagtggaaatttttggtgtggttaaaattagcaataggaaagccatatactttgacatcctttgacatcttggtaattcttgattatgccaa |
1799454 |
T |
|
| Q |
105 |
tcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagat |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
1799455 |
tcatatattatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttagac |
1799554 |
T |
|
| Q |
204 |
tctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
1799555 |
tctagtacatggttaatgtttgatcgtttaaag |
1799587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 21247108 - 21247332
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| ||||||| ||||| ||||||| ||| |
|
|
| T |
21247108 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatattttgacatcttggttattcttggttatgccaatcatatat |
21247207 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||| ||| |||||||| ||| | |||||| |
|
|
| T |
21247208 |
tatttatgtgcttcattatgtatcacatgtattagttttccatctgacaagtatggctgtactttactatgctgactttcatatcattataccttaatac |
21247307 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
21247308 |
atggttaatgtttgatcgtttaaag |
21247332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 42775206 - 42775023
Alignment:
| Q |
49 |
attagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagt |
148 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||||||| ||||| ||||||| | | |||| ||||||| |||||||||| |||| |||||| |
|
|
| T |
42775206 |
attaccaatagcaaagccatatattttgacatcttggtaattcttggttatgccaatcatatgtcatttctgtgctttattatgtatgtcatgcattagt |
42775107 |
T |
|
| Q |
149 |
tttccatctaacaagtgtggttgtactttactatgcagacttcatatcgttagattctaatacatggttaatgtttgatcgttt |
232 |
Q |
| |
|
||||||||| ||| |||||| |||||||| |||||| ||||||||||| |||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
42775106 |
tttccatctgacaggtgtggctgtactttgctatgctgacttcatatcattaggctctaatacatggtaaatgtctgatcgttt |
42775023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 29487748 - 29487590
Alignment:
| Q |
75 |
tgacatcttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtac |
174 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||| ||||| |
|
|
| T |
29487748 |
tgacatcttggtaattcttggttatgcgaatcatatatcatttatgtgcttcattatgtatgtcatgcattagttttccatctgacaggtgtggctgtac |
29487649 |
T |
|
| Q |
175 |
tttactatgcagac-ttcatatcgttagattctaatacatggttaatgtttgatcgttt |
232 |
Q |
| |
|
||| |||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
29487648 |
tttgctatgctgactttcatatcattagactctaatacatgattaatgtttgatcgttt |
29487590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 25377250 - 25377035
Alignment:
| Q |
17 |
taaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtattatt |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||| ||| | ||||| | ||||||||| |||||||||| ||||| ||| | | | ||| |
|
|
| T |
25377250 |
taaaggaagtggaaattattggtgtggttaaaattaacaatagaaaatc-atatattttgacatcttagtaattcttggttatgcaaattctatgtgatt |
25377152 |
T |
|
| Q |
117 |
tatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagactt-catatcgttagattctaatacatgg |
215 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||| ||| ||| ||||| |||||||| ||||| ||||| |||||| |||| |||||||||||| |
|
|
| T |
25377151 |
tatgtgcttcactatgtatgtcatgcattagttttctatccgacaggtgtgactgtactttgctatgttgactttcatatcattaggctctaatacatgg |
25377052 |
T |
|
| Q |
216 |
ttaatgtttgatcgttt |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25377051 |
ttaatgtttgatcgttt |
25377035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 16797891 - 16798040
Alignment:
| Q |
85 |
gtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatg- |
183 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| ||| ||||| | |||||| ||||| |
|
|
| T |
16797891 |
gtaattcttggttatgtcaatcatgtgccatttatgtgcttcattatgtatgccatatattagtttttcatctgacaggtgtgactttactttgctatgt |
16797990 |
T |
|
| Q |
184 |
cagac-ttcatatcgttagattctaatacatggttaatgtttgatcgttt |
232 |
Q |
| |
|
||| |||||||| |||| ||||||| || |||||||||||||||||| |
|
|
| T |
16797991 |
tggactttcatatcattaggctctaatatatagttaatgtttgatcgttt |
16798040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 16797356 - 16797402
Alignment:
| Q |
85 |
gtaattcttgattatgtcaatcatgtattatttatgtgcttcattat |
131 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
16797356 |
gtaattcttgattatgtcaatcatatgtcatttatgtgcttcattat |
16797402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 6336631 - 6336855
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6336631 |
aatataaaggaagtggaaatttttagtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
6336730 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
6336731 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatggtgactttcatatcgttagactctaatac |
6336830 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6336831 |
atggttaatgtttgatcgtttaaag |
6336855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 56443652 - 56443428
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||| |
|
|
| T |
56443652 |
aatataaaggaagtggaaatttttgatgtggttaaaattagcaatagcaaagccatatactttgacatctttgtaatttttggttatgccaatcatgtat |
56443553 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||| || |
|
|
| T |
56443552 |
tatttatgtgcttcattatgtatgacatgtgttagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttagactctaagac |
56443453 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
56443452 |
atgattaatgtttgatcgtttaaag |
56443428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 55082958 - 55082736
Alignment:
| Q |
15 |
tataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
55082958 |
tataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtatta |
55082859 |
T |
|
| Q |
115 |
tttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatacat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||| ||| |||||||||||| | |||||||||| |
|
|
| T |
55082858 |
tttatgtgcttcattatgtatgacatgtattagttttctatctgacaagtatggttgtcctttactatgttgactttcatatcgttaaactctaatacat |
55082759 |
T |
|
| Q |
214 |
ggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
55082758 |
agttaatgtttgatcgtttaaag |
55082736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 1613938 - 1613748
Alignment:
| Q |
47 |
aaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtatta |
146 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1613938 |
aaattaacaataacaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtattatttatgtgcttcattatgtatgacatgtatta |
1613839 |
T |
|
| Q |
147 |
gttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
1613838 |
gttttccatctcacaagtgtggttgtactttactatgctgactttcatatcgttagactctaatacatggttaatgtttgattgtttaaag |
1613748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 48083468 - 48083248
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
48083468 |
aatataagagaagtggaaatttttggtgtggttaaaattagcaa--gcaaagccatatattttgacatcttggtaattcttggttatgtcaatcatatgt |
48083371 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgta--tgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaat |
209 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||| ||| ||||| |||| ||| |||||| ||| |||||||| ||| |||||| |
|
|
| T |
48083370 |
catttatgtgcttcattatgtatgtgtcatgcattagttttccatctgacaggtgtgactgtattttgctatgctgactttcatatcattaagctctaat |
48083271 |
T |
|
| Q |
210 |
acatggttaatgtttgatcgttt |
232 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48083270 |
acatggttaatgtttgatcgttt |
48083248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 12800676 - 12800539
Alignment:
| Q |
46 |
gaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtatt |
145 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| ||| || ||| ||||||||||||| | |||||||||||||||||| |||||| |||| ||| |
|
|
| T |
12800676 |
gaaattagcaatagcaaagccatatattttgacatctttgtagtttttggttatgtcaatcatatgttatttatgtgcttcattttgtatgtcatgcatt |
12800577 |
T |
|
| Q |
146 |
agttttccatctaacaagtgtggttgtactttactatg |
183 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
12800576 |
agttttccatctgacaggtgtggttgtactttgctatg |
12800539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 42259977 - 42260096
Alignment:
| Q |
114 |
atttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaataca |
212 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||| ||| ||||| |||||||| |||||| ||| |||||||| ||| ||| |||||| |
|
|
| T |
42259977 |
atttatgtgcttcattatgtatgtcatgcattagttttccttctgacaggtgtgactgtactttgctatgctgactttcatatcattaagttcaaataca |
42260076 |
T |
|
| Q |
213 |
tggttaatgtttgatcgttt |
232 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42260077 |
tggttaatgtttgatcgttt |
42260096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 1614363 - 1614324
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaatta |
52 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1614363 |
aatataaagaaagtggaaatttttggtgtggttaaaatta |
1614324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 35235367 - 35235143
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35235367 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatataatttgacatcttggtaattcttggttatgtcaatcatgtat |
35235268 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
35235267 |
tatttatgtgcttcattatgtttgacatgtattagttttccatctgacatgtgtggttgtactttactatgctgactttcatatcgttagactctaatac |
35235168 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35235167 |
atggttaatgtttgatcgtttaaag |
35235143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 54627686 - 54627909
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
54627686 |
aatataaaggaagtggaaattttttgtgtggttaaaattagcaatagcaaagcaatatactttgacatcttggtaattcttggttatgccaatcatgtat |
54627785 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagacttcatatcgttagattctaataca |
212 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54627786 |
tatatatgtgtttcattatgtatgacatgtattagtttttcatcagacaaatgtggttgtactttactatgcagacttcatatcgttagactctaataca |
54627885 |
T |
|
| Q |
213 |
tggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
54627886 |
tggttaatgtttgatcgtttaaag |
54627909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 54602786 - 54603010
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| | |
|
|
| T |
54602786 |
aatataaaggaaatgaaaatttttggtgtggttaaaattagcaatagcaaagtcatatactttgacatcttggtaattcttggttatgccaatcatgtct |
54602885 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
54602886 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttagactctaatac |
54602985 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
54602986 |
atggttaatgttcgatcgtttaaag |
54603010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 1092537 - 1092313
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| | |||| |
|
|
| T |
1092537 |
aatataaaggaagtgaaaatttttggtgtggttaaaattagcaatagcaaagccatatattgtgacatcttggtaattcttggttatgtcaattaagtat |
1092438 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
1092437 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctggcaagtgtggttgtactttactatgctgactttcatatcgttagactctaatac |
1092338 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| ||||| ||||||||||||||| |
|
|
| T |
1092337 |
atgattaatttttgatcgtttaaag |
1092313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 40066150 - 40066373
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
40066150 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatatcaaagtcatatactttgacatcttggtaattcttggttacaccaatcatgtat |
40066249 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
40066250 |
tatttatgtgcttcattatgtatgacatgtattagttttccatttgacaagtgtggttgtactttactatgttgactttcatatcgttagactctaatac |
40066349 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaa |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40066350 |
atggttaatgtttgatcgtttaaa |
40066373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 20819745 - 20819522
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
20819745 |
aatataaaggaagtg-aaatttttggtgtggttaaaattagcaatagcaaggccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
20819647 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||||| |||||||| |
|
|
| T |
20819646 |
tatttatgtgcttcattatgtttgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttctaatcgttagactctaatac |
20819547 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
20819546 |
atggttaatgtttgattgtttaaag |
20819522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 32751347 - 32751571
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||| ||| ||||| ||| ||||||||||||||||| |
|
|
| T |
32751347 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaaaccatatattttgacatgttgataattgttggttatgtcaatcatgtat |
32751446 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
32751447 |
tatttatgtgcttcattatgtatgacatgtattagtttttcatctgacaagtgtggttgtactttactacattgactttcatatcgttagactctaatac |
32751546 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32751547 |
atggttaatgtttgatcgtttaaag |
32751571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 24782735 - 24782968
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24782735 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgtcaatcatgtat |
24782834 |
T |
|
| Q |
113 |
ta-tttatgtgcttcattatgtatgacatgtattagttttcc--------atctaacaagtgtggttgtactttactatgcagact-tcatatcgttaga |
202 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
24782835 |
tattttatgtgctttattatgtatgacatgtattagttttccatctgacaatctgacaagtgtgattgtactttactatgctgactctcatatcgttaga |
24782934 |
T |
|
| Q |
203 |
ttctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
24782935 |
ctctaatacatggttaatgtttgatcatttaaag |
24782968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 35234265 - 35234045
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||||||| | | |
|
|
| T |
35234265 |
aatataaagggagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatattttgacatcttggtaattcttggttatgccaatcatatgt |
35234166 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||||||||| ||| |||||| |||||||| |||||| | | || ||||| |||| ||||||| |
|
|
| T |
35234165 |
cattcatgtgcttcattatgtatgtcatgcattagttttccatctgacaggtgtggctgtactttgctatgctgtcttttatatcattaggcactaatac |
35234066 |
T |
|
| Q |
212 |
atggttaatgtttgatcgttt |
232 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35234065 |
atggttaatgtttgatcgttt |
35234045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 54493209 - 54493021
Alignment:
| Q |
46 |
gaaattagcaatagcaaagccatatactctgacatcttggtaattctt-gattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtat |
144 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| ||||| || | |||| ||||||| | | |||||||||||||||||||||| |||| || |
|
|
| T |
54493209 |
gaaattagcaatagcaaagccatatattttgacatcttgataattttttggctatgccaatcatatgtcatttatgtgcttcattatgtataccatgcat |
54493110 |
T |
|
| Q |
145 |
tagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatacatggttaatgtttgatcgttt |
232 |
Q |
| |
|
||||||| ||| | ||| |||||||| |||||| ||||| ||| |||||||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
54493109 |
tagtttttcatttgacaggtgtggttatactttgttatgctgactttcatatcattaggctctaatacatcattaatgtttgatcgttt |
54493021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 55482041 - 55482135
Alignment:
| Q |
96 |
ttatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagactt |
190 |
Q |
| |
|
||||| ||||||| | | ||||||||||||||||||||||| |||| ||||||||| ||| | |||||||||| ||||| || |||||| ||||| |
|
|
| T |
55482041 |
ttatgccaatcatatgtcatttatgtgcttcattatgtatgtcatgcattagtttttcatatgacaagtgtggctgtacgttgctatgctgactt |
55482135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 55481556 - 55481641
Alignment:
| Q |
80 |
tcttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtg |
165 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| | | ||||||||||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
55481556 |
tcttggtaattattggttatgccaatcatatgtcatttatgtgcttcattatgtatgtaatgcattagtttttaatctaacaagtg |
55481641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 15565185 - 15565409
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15565185 |
aatataaaggacgtgtaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
15565284 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
15565285 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttagactctaatac |
15565384 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
15565385 |
atggttaacgtttgatcgtttaaag |
15565409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 44308628 - 44308408
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
44308628 |
aatataaatgaaatggaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
44308529 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
44308528 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaac----gtggttgtactttactatgttgactttcatatcgttagactctaatac |
44308433 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44308432 |
atggttaatgtttgatcgtttaaag |
44308408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 20832234 - 20832015
Alignment:
| Q |
15 |
tataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtatta |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
20832234 |
tataaaggaagtggaaatttttggtg--gttaaaattagcaatagcaaagccatatactttgacatcttggtaatttttggttatgtcaatcatgcatta |
20832137 |
T |
|
| Q |
115 |
tttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatacat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
20832136 |
tttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttagactctaatacat |
20832037 |
T |
|
| Q |
214 |
ggttaatgtttgatcgtttaaa |
235 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
20832036 |
ttttaatgttttatcgtttaaa |
20832015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 26353 - 26120
Alignment:
| Q |
15 |
tataaaggaagtggaaatttttggtgtggttgaaatta-gcaatagcaaagccatatactctgacatc----------ttggtaattcttgattatgtca |
103 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||| || |
|
|
| T |
26353 |
tataaaggaagtgaagatttttggtgtggttaaaattaagcaatagcaaagccatatactttgacatcctttgacatcttggtaattcttggttatgcca |
26254 |
T |
|
| Q |
104 |
atcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttaga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
26253 |
atcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagcgtggttgtactttactatgctgactttcatatcgttaga |
26154 |
T |
|
| Q |
203 |
ttctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
26153 |
ctataatacatggttaatgtttgatcgtttaaag |
26120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 25630690 - 25630483
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| | |||||||||| | |||| ||||||| | | |
|
|
| T |
25630690 |
aatataaaggaagtggaaatttatggtgtggttaaaattagcaataacaaagccatatattttgacatcttgtt----------tatgccaatcatatgt |
25630601 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| | | |||||| | |||||| |||||| ||| |||||||| |||| |||||||| |
|
|
| T |
25630600 |
catttatgtgcttcattatgtatgtcatgcattagttttccatctgaaaggtgtggctctactttgctatgctgactttcatatcattaggctctaatac |
25630501 |
T |
|
| Q |
212 |
atggttaatgtttgatcg |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25630500 |
atggttaatgtttgatcg |
25630483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 12502602 - 12502392
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| | |||| ||||||| |||||||||||| | | |
|
|
| T |
12502602 |
aatataaaggaagtggaaatttttggtgtggttaaaatgagcaatagcaaagcgatatattttgacttcttggt----------tatgtcaatcatatgt |
12502513 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||| |||||||| ||| ||||||| |
|
|
| T |
12502512 |
catttatgtgctttattatgtatgttatgcattagttttccatctgacatgtgtggttgtactttgttatgctgacgttcatatcattaagctctaatat |
12502413 |
T |
|
| Q |
212 |
atggttaatgtttgatcgttt |
232 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12502412 |
atggttaatgtttgatcgttt |
12502392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 26832055 - 26831831
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26832055 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatactgtgacatcttggtaattcttggttatgccaatcatgtat |
26831956 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
26831955 |
tatttatgtgcttcattatgtatgacatgtattagtttttcatctgacaagtgtggctgtactttactatgttgactttcatatcgttagactctaatac |
26831856 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26831855 |
atggttaatgtttgatcgtttaaag |
26831831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 14103479 - 14103703
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
14103479 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatattttgatatcttggtaattcttggttatgtcaatcatgtat |
14103578 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
14103579 |
tatttatgtgtttcattatgtatgacatgtattagtttttcatctgacaagtatgattgtactttactatgctgactttcatatcgttagactctaatac |
14103678 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
14103679 |
atgattaatgtttgatcgtttaaag |
14103703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 14413496 - 14413720
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
14413496 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatattttgatatcttggtaattcttggttatgtcaatcatgtat |
14413595 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
14413596 |
tatttatgtgtttcattatgtatgacatgtattagtttttcatctgacaagtatgattgtactttactatgctgactttcatatcgttagactctaatac |
14413695 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
14413696 |
atgattaatgtttgatcgtttaaag |
14413720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 36897916 - 36897694
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
36897916 |
aatataaaggaagtgaaaatttttggtgtggttaaaatttgcaatagcaaagtcatatactttgacatcttggtaattcttgactatgccaatcatgtat |
36897817 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
36897816 |
tatttatgtgcttcattatgtatgacatgtattagtttttcatct--caagtgtggttgtactttactatgctgactttcatatcgttagactctaatac |
36897719 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
36897718 |
atgattaatgtttgatcgtttaaag |
36897694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 26928510 - 26928375
Alignment:
| Q |
102 |
caatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcaga-cttcatatcgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
26928510 |
caatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgattttcatatcgtta |
26928411 |
T |
|
| Q |
201 |
gattctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26928410 |
gactctaatacatggttaatgtttgatcgtttaaag |
26928375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 15752742 - 15752529
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| | ||||||| ||||||||||| ||||| ||||||| | | |
|
|
| T |
15752742 |
aatataaaggaagtggaaatttttggtgtggttaagattagcaataacaaagccatatatttcgacatctcggtaattcttggttatgccaatcatatgt |
15752643 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||| || | ||| |||||| |||| |||||| ||| || ||||| |||| |||||| |
|
|
| T |
15752642 |
catttatgtgcttcattatgtatgatatgcattacttttctatttgaca----gggttgttctttgctatgctgacttttatatcattaggctctaatgg |
15752547 |
T |
|
| Q |
212 |
atggttaatgtttgatcg |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15752546 |
atggttaatgtttgatcg |
15752529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 42261243 - 42261057
Alignment:
| Q |
46 |
gaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtatt |
145 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||| ||||| ||| |||| ||| ||| | | |||||||||||| |||||||||| |||| ||| |
|
|
| T |
42261243 |
gaaattagcaatagcaaaaccatatattttgacatcttgataatttttggttataccaaacatatgtcatttatgtgctttattatgtatgtcatgcatt |
42261144 |
T |
|
| Q |
146 |
agttttccatctaacaagtgtggttgtactttactatgcag-acttcatatcgttagattctaatacatggttaatgtttgatcgttt |
232 |
Q |
| |
|
| ||||| |||| ||| |||||||||||| || |||| | | | ||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
42261143 |
atttttctatctgacatgtgtggttgtac-ttgctatactgaatttcatttgattaagctctaatacatggttaatgtttgatcgttt |
42261057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 1829 - 1606
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
1829 |
aatataaaggaagtgaaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttgataattcttagttatgcgaatcatgtat |
1730 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagacttcatatcgttagattctaataca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
1729 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgacttcatatcgttagactctaataca |
1630 |
T |
|
| Q |
213 |
tggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
1629 |
tggttaatgtttgatcgattaaag |
1606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 5574489 - 5574265
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
5574489 |
aatataaaggaagtggaaatttttggtgtggttaaaattagcaatagcaaagccatatactgtgacatcttggtaattatcggttatgtcaatcatgtat |
5574390 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
5574389 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtggctgtactttactatgctgactttcatatcgttagactctaatac |
5574290 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| ||||||||||| ||||||||| |
|
|
| T |
5574289 |
atgattaatgtttgaacgtttaaag |
5574265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 17647948 - 17648171
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
17647948 |
aatataaaggaagtg-aaatttttggtgtggttaaaattagcaatagcaaggccatatactctgacatcttgttaattcttggttatgtcaatcatatat |
17648046 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
17648047 |
tatttatgtgcttcattatgtttgacatgtattagttttccatctgacaagtgtggttgtactttactatgctgactttcatatcgttagactctaatac |
17648146 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
17648147 |
atggttaatgtttgattgtttaaag |
17648171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 6915022 - 6915232
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| | |||| ||||||| |||||||||||| | | |
|
|
| T |
6915022 |
aatataaaggaagtgggaatttttggtgtggttaaaattagcaataacaaagccatatattttgacgtcttggt----------tatgtcaatcatatgt |
6915111 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||||| |||| ||| |||||||| |||| |||||||| |
|
|
| T |
6915112 |
catttatgtgcttcattatgtatgtcatgcattagttttccatctgacaggtgtggttgtactttgttatgttgactttcatatcattaggctctaatac |
6915211 |
T |
|
| Q |
212 |
atggttaatgtttgatcgttt |
232 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
6915212 |
atgattaatgtttgatcgttt |
6915232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 20731469 - 20731546
Alignment:
| Q |
82 |
ttggtaattcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaa |
159 |
Q |
| |
|
|||||||||||| ||||||||||||| | | ||||||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
20731469 |
ttggtaattcttagttatgtcaatcatatgtcatttatgtgcttcattatgtatgtcatgcattagtttttcatctaa |
20731546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 20731095 - 20731163
Alignment:
| Q |
114 |
atttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatg |
183 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||| | |||||||||||||||| ||||| |
|
|
| T |
20731095 |
atttatgtgcttcattatgcatgtcatgtattatttttccatccga-gagtgtggttgtactttgctatg |
20731163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 15830513 - 15830737
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15830513 |
aatataaaggaagtgaaattttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
15830612 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
15830613 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctcacaagtgtggttgtactttactatgttgactttcatatcgttagactctaatac |
15830712 |
T |
|
| Q |
212 |
atggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||| |||||||||||| |||||||| |
|
|
| T |
15830713 |
atgattaatgtttgattgtttaaag |
15830737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 9708532 - 9708766
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgac----------atcttggtaattcttgattatgtc |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| | |
|
|
| T |
9708532 |
aatataaaggaagtgaaaatttttggtgtggttaaaattagcaatagcaaagccatatactttgacatcctttgacatcttggtaattcttggttatgcc |
9708631 |
T |
|
| Q |
103 |
aatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||| ||||||||||||| |
|
|
| T |
9708632 |
aatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctgacaagtgtgattctactttactatgctgactttcatatcgttag |
9708731 |
T |
|
| Q |
202 |
attctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9708732 |
actctaatacatggttaatgtttgatcgtttaaag |
9708766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 36207486 - 36207277
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||| |||||||||||| | | |
|
|
| T |
36207486 |
aatataaaggaagttgaaatttttggtgtggttaaaattagcaataacaaaggcatatatgttgacatcttggt----------tatgtcaatcatatgt |
36207397 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||| | ||| ||||||||||||||| |||||| ||| |||||||| |||| |||||||| |
|
|
| T |
36207396 |
catttatgtgcttcattatgtatgtcatgcattaattttccatgtgacaggtgtggttgtactttgctatgctgactttcatatcattag-ctctaatac |
36207298 |
T |
|
| Q |
212 |
atggttaatgtttgatcgttt |
232 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
36207297 |
atggttaatgtttgttcgttt |
36207277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 38937780 - 38937661
Alignment:
| Q |
114 |
atttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaataca |
212 |
Q |
| |
|
||||||||| ||||| |||||| ||| ||||||||| ||||| ||| |||| ||||||||||| ||||| ||| |||| ||| | || ||||||||| |
|
|
| T |
38937780 |
atttatgtgtttcatcgtgtatgctatgcattagtttttcatctgacaggtgtagttgtactttattatgctgactttcacatcatcaggctctaataca |
38937681 |
T |
|
| Q |
213 |
tggttaatgtttgatcgttt |
232 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
38937680 |
tggttaatttttgatcgttt |
38937661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 11099595 - 11099737
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
11099595 |
aatataaaggaagtggaaattttttgtgtggttaaaattagcaatagcgaagccatatactttgacatcttggtaattcttggttatgccaatcatgtat |
11099694 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11099695 |
tatttatgtgcttcattatgtatgacatgtattagttttccat |
11099737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 1563569 - 1563782
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| | ||||||| ||||||||||| ||||| ||||||| | | |
|
|
| T |
1563569 |
aatataaaggaagtggaaatttttggtgtggttaagattagcaataacaaagccatatatttcgacatctcggtaattcttggttatgccaatcatatgt |
1563668 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagac-ttcatatcgttagattctaatac |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||| || | ||| |||||| |||| |||||| ||| || ||||| |||| |||||| |
|
|
| T |
1563669 |
catttatgtgcttcattatgtatgatatgcattacttttctatttgaca----gggttgttctttgctatgctgacttttatatcattaggctctaatgg |
1563764 |
T |
|
| Q |
212 |
atggttaatgtttgatcg |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1563765 |
atggttaatgtttgatcg |
1563782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 11099739 - 11099778
Alignment:
| Q |
197 |
gttagattctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
11099739 |
gttagactctaatacatggttaatgtttgatcgtataaag |
11099778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 12971 - 13098
Alignment:
| Q |
13 |
aatataaaggaagtggaaatttttggtgtggttgaaattagcaatagcaaagccatatactctgacatcttggtaattcttgattatgtcaatcatgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| | ||||||||||| ||||| ||||||| | | |
|
|
| T |
12971 |
aatataaaggaagtggaaattttttgtgtggttaaaattagcaataacaaagccatatattttgacatcttgg----------ttatgccaatcatatgt |
13060 |
T |
|
| Q |
113 |
tatttatgtgcttcattatgtatgacatgtattagttt |
150 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
13061 |
catttatgtgcttcattatgtatgtcatgcattagttt |
13098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 42198 - 42263
Alignment:
| Q |
172 |
tactttactatgcagactt-catatcgttagattctaatacatggttaatgtttgatcgtttaaag |
236 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42198 |
tactttactatgctgactttcatatcgttagactctaatacatggttaatgtttgatcgtttaaag |
42263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 425054 - 425154
Alignment:
| Q |
90 |
tcttgattatgtcaatcatgtattatttatgtgcttcattatgtatgacatgtattagttttccatctaacaagtgtggttgtactttactatgcagact |
189 |
Q |
| |
|
||||| ||||| ||||||| | | ||||||||||||||||||||||| |||| |||||||||| |||| ||| |||| |||||||||| |||||| |||| |
|
|
| T |
425054 |
tcttggttatgccaatcatatgtcatttatgtgcttcattatgtatgtcatggattagttttcaatctgacaggtgttgttgtactttgctatgctgact |
425153 |
T |
|
| Q |
190 |
t |
190 |
Q |
| |
|
| |
|
|
| T |
425154 |
t |
425154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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