View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_29 (Length: 241)
Name: NF7309_high_29
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16742177 - 16742399
Alignment:
| Q |
1 |
tagacaaagaagatgtcatcacttgggtcaatccttttaaggatgttgctcctattagtttgccacccatcgataattatatggtatgtaaggattacga |
100 |
Q |
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| T |
16742177 |
tagacgaagaagatgtcatcacttgggtgaatccttttaaggatgttgctcctattagtttgccacccatcgataattatatggtatgtaaggattacga |
16742276 |
T |
|
| Q |
101 |
cttcaatgtgcataaggttacattgtcggttgatcctataacaagtccaactgattatgtggttgcagcaatttatactacccgtagttgtcttgctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16742277 |
cttcaatgtgcataaggttacattgtcggttgatcctataacaagtccaaatgattatgtggttgcagcaatttacactacccgtagttgtcttgctttt |
16742376 |
T |
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| Q |
201 |
ataaaagcaggacaagagttttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
16742377 |
ataaaagcaggacaagagttttg |
16742399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16723788 - 16724010
Alignment:
| Q |
1 |
tagacaaagaagatgtcatcacttgggtcaatccttttaaggatgttgctcctattagtttgccacccatcgataattatatggtatgtaaggattacga |
100 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16723788 |
tagacgaagaagatgtcatcacttgggtgaatccttttaaggatgttgctcctattagtttgccacccattgataattatatggtatgtaaggattacga |
16723887 |
T |
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| Q |
101 |
cttcaatgtgcataaggttacattgtcggttgatcctataacaagtccaactgattatgtggttgcagcaatttatactacccgtagttgtcttgctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
16723888 |
cttcaatgtgcataaggttacattgtcggttgatcctataacaagtccaaatgattatgtggttgcaggaatttacactacccgtagtagtcttgctttt |
16723987 |
T |
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| Q |
201 |
ataaaagcaggacaagagttttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
16723988 |
ataaaagcaggacaagagttttg |
16724010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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