View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7309_high_3 (Length: 647)
Name: NF7309_high_3
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 264 - 635
Target Start/End: Original strand, 39939875 - 39940246
Alignment:
| Q |
264 |
ctgttcttctatgtactgtataaattgggcataattagatgtctatgtcactctgcttgcaaattgatatgggcatgtttctcttcttgtttccacattt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39939875 |
ctgttcttctatgtactgtataaattgggcataattagatgtctatgtcactctgcttgcaaattgatatgggcatgtttctcttcttgtttccacattt |
39939974 |
T |
|
| Q |
364 |
gggtgtattcatgcactttcttatgtgttaaactacacaatgtcaagaggaggaggagaagaaagtttagaatggaaatgaatgaagaagaatacatcga |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39939975 |
gggtgtattcatgcactttcttatgtgttaaactacacaatgtcaagaggaggaggagaagaaagtttagaatggaaatgaatgaagaagaatacatcga |
39940074 |
T |
|
| Q |
464 |
cgaaagcctttcatatcaccttccagtatctgcagaattaagcagatcgttttcgcgtagaaggagagactataaaggccaccacttaaggaagtctttg |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39940075 |
cgaaagcctttcatatcaccttccagtatctgcagaattaagcagatcgttttcgcgtagaaggagagactataaaggccaccacttaaggaagtctttg |
39940174 |
T |
|
| Q |
564 |
aagcctaagaggggtcgttctcaagttgaaattagtagaaattttagttataagaataaaagtaatcatatt |
635 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39940175 |
aagcctaagaggggtcgtgctcaagttgaaattagtagaaattttagttataagaataaaagtaatcatatt |
39940246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 39939612 - 39939814
Alignment:
| Q |
1 |
cctgcagcagagaactgacttcttacttggtatatatgttttcagttcagtatgtggaccaacatgggatctctcttgttatatcgaaaatttttgtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39939612 |
cctgcagcagagaactgacttcttacttggaatatatgttttaagttcagtatgtggaccaacatgggatctctcttgttatatcgaaattttttgtgtt |
39939711 |
T |
|
| Q |
101 |
gctaatctattgagattggccgtggtatttgttctattgtacattggtgagttcaattgttttgctatttcattacaacatgtttcaatttcagattcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39939712 |
gctaatctattgagattggccgtggtatttgttctattgtacattggtgagttcaattgttttggtatttcattacaacatgtttcaatttcagattcca |
39939811 |
T |
|
| Q |
201 |
acc |
203 |
Q |
| |
|
||| |
|
|
| T |
39939812 |
acc |
39939814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University