View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_31 (Length: 240)
Name: NF7309_high_31
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 8773350 - 8773535
Alignment:
| Q |
19 |
gaaaaatctcttagcccatagatcccgtacgctttccatcaactgttcagtactacatccatattccgtaaagtacctattttgtgctagctttctagtc |
118 |
Q |
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| T |
8773350 |
gaaaaatctcttagcccgtagatcccgtacgctttccattagctgttcagtactacatccatattccgtaaagtacctattttgtgctagttttctagtc |
8773449 |
T |
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| Q |
119 |
ttcgattccggttaagcagagagagtgattggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaac |
204 |
Q |
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| T |
8773450 |
ttcaattccggttaagcagagagagtgattggtaaagaggaaaatgagcaattaacaatcttcattttgtgcaagatttcaccaac |
8773535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 8775822 - 8775880
Alignment:
| Q |
146 |
attggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaac |
204 |
Q |
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| T |
8775822 |
attggtaaagagaaaagttagcaattaacaatctttattttgggcaagattgcaccaac |
8775880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 8787784 - 8787734
Alignment:
| Q |
146 |
attggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatt |
196 |
Q |
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| T |
8787784 |
attggtaaagagaaaagttagcaattaacaatctttattttgggcaagatt |
8787734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 44270102 - 44270198
Alignment:
| Q |
49 |
gctttccatcaactgttcagtactacatccatattccgtaaagtacctat--------tttgtgctagctttctagtcttcgattccggttaagcag |
137 |
Q |
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| T |
44270102 |
gctttccattagctgttcaatactacacccatattctgtaaagtaactatccagtcattctgtgctagctttctagtctttgattccggtaaagcag |
44270198 |
T |
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