View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_38 (Length: 218)
Name: NF7309_high_38
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 27228079 - 27227890
Alignment:
| Q |
14 |
tgtgctctaagcagctgcaaacttcccaaaccagtatcggccagcagacttcattttatcatccaaagcatcaatatcacaatctctttcgccaagtgaa |
113 |
Q |
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| T |
27228079 |
tgtgctctaagcagctgcaaacttcccaaaccagtatcggccagcagacttcattttatcatccaaagcatcaatatcacaatctctttcgccaagtgaa |
27227980 |
T |
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| Q |
114 |
tcacttaaattccaccaatacaaaactttaccacattgccaagatatattcaaaggattatatggtttctgtcgggataatatccattctg |
204 |
Q |
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| T |
27227979 |
ccacttaaattccaccaatacaaaactttaccaca-tgccaagatatattcaaaggattatatggtttctgtcgggataatatccattctg |
27227890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 5076720 - 5076560
Alignment:
| Q |
43 |
accagtatcggccagcagacttcattttatcatccaaagcatcaatatcacaatctctttcgccaagtgaatcacttaaattccaccaatacaaaacttt |
142 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||| |||||||||||||||| |||| |
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| T |
5076720 |
accagtatcgcccagcagacttcattttatcatccaaagcatcaatatcgccatctctttccccaagtgaaccactttgattccaccaatacaaaccttt |
5076621 |
T |
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| Q |
143 |
accacattgccaagatatattcaaaggattatatggtttctgtcgggataatatccattctg |
204 |
Q |
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| || | ||| ||| || ||||| |||||||||||||| || |||| ||||||||||||| |
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| T |
5076620 |
aacatgtcgcccagacatgttcaagggattatatggtttgtgccggg-caatatccattctg |
5076560 |
T |
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