View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7309_high_4 (Length: 561)
Name: NF7309_high_4
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 11277213 - 11277509
Alignment:
| Q |
9 |
aagtttaattcttaaatggaacaattttttatcctattttatttatctttcaacccaacttcaacttcagattatgagaacattaatttaacgtgaagat |
108 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
11277213 |
aagtttaatttttaaatagaacaattttttatcctattttatttatctttcaacccaactttg------gattatcagaacattaagttaacgtgaagat |
11277306 |
T |
|
| Q |
109 |
aaagaaagtgaatttgtgatgcgcacgcacatgtgaagctaagaccacacgcacatgataactgatgtataaacaaaagtggaaaattgaagggtctcta |
208 |
Q |
| |
|
| |||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11277307 |
agagaaagtgaagctaagaa-cgcacgcacatgtgaagctaagaacacacgcacatgataactgatgtataaacaaaagtagaaaattgaagggtctcta |
11277405 |
T |
|
| Q |
209 |
tggggggaacacagataaacacacacttttttcgtctttctgcactaccactgcactcaccataacataacaacattgaattgaccttcaactaagaaag |
308 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11277406 |
tgggg--aacacagataaacacacacttttttcgtctttctgctctaccactgcactcaccgtaacataacaacattgaattgaccttcaact-agaaag |
11277502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 333 - 444
Target Start/End: Original strand, 11277822 - 11277931
Alignment:
| Q |
333 |
tgcacccttttaatcaattctcataagagacaaaaacctatctttacaagatgtaaaatgaatattgatatttttccatataaacagtgttaatataagt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
11277822 |
tgcacccttttaatcaattctcataagagacaaaaacctatctttacaagatgtaaaatgaatattgatatttttccatataagca--gttaatataagt |
11277919 |
T |
|
| Q |
433 |
aaacaaatgaaa |
444 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11277920 |
aaacaaatgaaa |
11277931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University