View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_high_5 (Length: 556)
Name: NF7309_high_5
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Original strand, 54494848 - 54495361
Alignment:
| Q |
20 |
caatacctcaactccaaatcaggataaccaaatttcagttgcacaatactacaatcccgttgtggcaatggtcatggttgttgtcgatggcgcaatacaa |
119 |
Q |
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| T |
54494848 |
caatacctcaactccaaatcaggataaccaaatttcagttgcacaatactacaatcccgttgtggcaatggtcatggttgttgtcgatggcgcaatacaa |
54494947 |
T |
|
| Q |
120 |
atcacacacattgtgaaatttacccaaggccaaggcacaaggctgctacttggtgtcactacgatcaaaactcatctacaagctttgaccattgagtatt |
219 |
Q |
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| T |
54494948 |
atcacacacattgtgaaatttacccaaggccaaggcacaaggctgctacttggtatcactacgatcaaaactcatctacaagctttgaccgttgagtatt |
54495047 |
T |
|
| Q |
220 |
caactccctcaatatactacgatgccccttggtatccatactccggagcatcacctcaccttcaaccaacagaataccacccatcctagtccctgcactg |
319 |
Q |
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| T |
54495048 |
caactccctcaatatactatgatgccccttggtatccatactccggagcatcacctcaccttcaaccaacagaataccacccatcctagtccctgcactg |
54495147 |
T |
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| Q |
320 |
gccaggaaaaagttataatgggaaatagtcaaggagtctctattgaatctttagattaatctaaagttctacctcatttcaagcaaaatatctacctcta |
419 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54495148 |
gccaggaaaaagttataatgggaaatagtcaagaagtctctattgaatctttagattaatctaaagttctacctcatttcaagcaaaatatccacctcta |
54495247 |
T |
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| Q |
420 |
caacatatacctattatttctgatatccatgctttagaaatcactgcttgttgtgtttgtgaatcccatagattatatgacccccacccatccctcacta |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54495248 |
caacatatacctattatttctgatatccatgctttagaaatcactgcttgttgtgtttgtgaatcccatagattatatgacc----cccatccctcacta |
54495343 |
T |
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| Q |
520 |
ttcattctactccctttg |
537 |
Q |
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|||||||||||||||||| |
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| T |
54495344 |
ttcattctactccctttg |
54495361 |
T |
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