View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_high_9 (Length: 446)

Name: NF7309_high_9
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_high_9
NF7309_high_9
[»] chr6 (3 HSPs)
chr6 (13-430)||(1148798-1149210)
chr6 (227-277)||(23110788-23110838)
chr6 (227-307)||(23117539-23117618)
[»] chr5 (9 HSPs)
chr5 (19-175)||(27532455-27532605)
chr5 (63-148)||(27532027-27532108)
chr5 (225-356)||(13580495-13580626)
chr5 (225-356)||(13590640-13590771)
chr5 (227-307)||(5153689-5153769)
chr5 (227-358)||(13588608-13588739)
chr5 (218-358)||(13581676-13581816)
chr5 (227-338)||(13589521-13589632)
chr5 (312-354)||(5103144-5103186)
[»] chr4 (3 HSPs)
chr4 (19-176)||(40334529-40334681)
chr4 (58-171)||(40335036-40335144)
chr4 (218-357)||(53449214-53449353)
[»] chr3 (7 HSPs)
chr3 (19-175)||(2830336-2830487)
chr3 (58-175)||(2830865-2830977)
chr3 (219-296)||(48343314-48343391)
chr3 (227-278)||(27297629-27297680)
chr3 (225-277)||(22935449-22935501)
chr3 (218-270)||(53644428-53644480)
chr3 (218-307)||(6842498-6842588)
[»] chr8 (2 HSPs)
chr8 (219-304)||(44890305-44890390)
chr8 (281-328)||(12233701-12233748)
[»] chr7 (1 HSPs)
chr7 (218-305)||(4879917-4880005)
[»] chr1 (3 HSPs)
chr1 (95-171)||(41459120-41459195)
chr1 (218-307)||(48359913-48360002)
chr1 (218-305)||(33080960-33081048)
[»] scaffold0027 (1 HSPs)
scaffold0027 (219-328)||(140166-140276)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 1148798 - 1149210
Alignment:
Q  13 aatataaaaacacgaaattaaataaaatcatatgtaataacattaacaattgatacacacaattttgtcttaagtgccattaattaaatatcaaaattca 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  1148798 aatatgaaaacacgaaattaaataaaatcatatgtaataacattaacaattgatacacacaattttgtcttaagtgccattaa----atatcaaaattca 1148893  T
Q  113 tggtcctcaaataaatgacaccatatcattctcccccattaaaattgagtcaatcatttccttactctgccacatgttttcattcattcttgagaaagat 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1148894 tggtcctcaaataaatgacaccatatcattctcccc-attaaaattgagtcaatcatttccttactctgccacatgttttcattcattcttgagaaagat 1148992  T
Q  213 catcattccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgcttt 312  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  1148993 catcattccgcagcggttaactgccgaagttccgcggtagttaactatcgccggttaacttccacaatagttaattgtcgaagggatatttcggtgcttt 1149092  T
Q  313 attggtgtgtttcagccaaacactatgtgcaaacagcaaatttcatatgagccgaccaataaaatatgtacacccttctcgttcaatgatatttcaccac 412  Q
    | ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1149093 actggtgtgtttcagtcaaatactatgtgcaaacagcaaatttcatatgagccgaccaataaaatatgtacacccttctcgttcaatgatatttcaccac 1149192  T
Q  413 cctgtgctagtgaagaac 430  Q
    ||||||||||||||||||    
T  1149193 cctgtgctagtgaagaac 1149210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 23110838 - 23110788
Alignment:
Q  227 agttaactgccgaagttccgcggtagttaactatcgccggttaatttccgc 277  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||    
T  23110838 agttaactgccgaagttccgtggtagttaactaccgccggttaacttccgc 23110788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 23117539 - 23117618
Alignment:
Q  227 agttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggt 307  Q
    ||||||||||||||||||||||| |||||| || | |||||||| |||||| ||| |||| || | |||||||||||||||    
T  23117539 agttaactgccgaagttccgcgggagttaattaccaccggttaacttccgcgataattaactg-caaaggggtatttcggt 23117618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 27532455 - 27532605
Alignment:
Q  19 aaaacacgaaattaaataaaatcatatgtaataacattaacaattgatacacacaattttgtcttaagtgccattaattaaatatcaaaattcatggtcc 118  Q
    |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    |||||||||||||||| |||||||    
T  27532455 aaaacacgaaataaaataaaatcatatgtaataatgttaacaattgatacacacaattttgtcttaagtgcc----attaaatatcaaaatttatggtcc 27532550  T
Q  119 tcaaataaatgacaccatatcattctcccccattaaaattgagtcaatcatttcctt 175  Q
    ||| || ||||| ||||||||||| | | ||||||||||||||||||| ||||||||    
T  27532551 tcagat-aatgataccatatcatt-ttcaccattaaaattgagtcaattatttcctt 27532605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 27532108 - 27532027
Alignment:
Q  63 tgatacacacaattttgtcttaagtgccattaattaaatatcaaaattcatggtcctcaaataaatgacaccatatcattctcccc 148  Q
    ||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  27532108 tgatagacacaattttgtcttaagtgccattaa----atatcaaaattcatggtcctcaaataaatgataccatatcattttcccc 27532027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 356
Target Start/End: Complemental strand, 13580626 - 13580495
Alignment:
Q  225 gcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattggtgtgttt 324  Q
    |||||||||||| |||||||||  ||||||||||| |||||||||| ||||||   | |||| || |||||| ||||||||||  ||||  |||||||||    
T  13580626 gcagttaactgctgaagttccgttgtagttaactaccgccggttaacttccgcggcaattaactgccgaaggagtatttcggtattttaccggtgtgttt 13580527  T
Q  325 cagccaaacactatgtgcaaacagcaaatttc 356  Q
    ||| |||||||||||||  |||| ||||||||    
T  13580526 cagtcaaacactatgtgtgaacaacaaatttc 13580495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 356
Target Start/End: Original strand, 13590640 - 13590771
Alignment:
Q  225 gcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattggtgtgttt 324  Q
    |||||||||||| |||||||||  ||||||||||| |||||||||| ||||||   | |||| ||||||||| ||||||| ||  ||||  |||||||||    
T  13590640 gcagttaactgctgaagttccgttgtagttaactaccgccggttaacttccgcggcaattaactgtcgaaggagtatttctgtattttaccggtgtgttt 13590739  T
Q  325 cagccaaacactatgtgcaaacagcaaatttc 356  Q
    ||| |||||||||||||  |||| ||||||||    
T  13590740 cagtcaaacactatgtgtgaacaacaaatttc 13590771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 5153769 - 5153689
Alignment:
Q  227 agttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggt 307  Q
    ||||||||||| ||||||| ||||||||||||| ||| |||||| ||||||| ||||||| ||| |||| |||||||||||    
T  5153769 agttaactgcccaagttccacggtagttaactaccgctggttaacttccgcagtagttaagtgttgaagaggtatttcggt 5153689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 358
Target Start/End: Complemental strand, 13588739 - 13588608
Alignment:
Q  227 agttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattggtgtgtttca 326  Q
    |||||||||| ||||| | | || ||||||||| |||||||||| || |||  ||||||| || ||||||| ||||| |||  |||| | ||||||||||    
T  13588739 agttaactgctgaagtactgtggcagttaactaccgccggttaactttcgcggtagttaactgccgaagggatattttggtattttactagtgtgtttca 13588640  T
Q  327 gccaaacactatgtgcaaacagcaaatttcat 358  Q
    |||||||||||| ||  ||||| |||||||||    
T  13588639 gccaaacactatatgtgaacagtaaatttcat 13588608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 358
Target Start/End: Original strand, 13581676 - 13581816
Alignment:
Q  218 ttccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattgg 317  Q
    |||||| | |||||||||| ||||| | | || ||||||||| |||||||||| || |||  ||||||| || ||||||| ||||| | |  |||| | |    
T  13581676 ttccgcggtagttaactgctgaagtactgtggcagttaactaccgccggttaactttcgcggtagttaactgccgaagggatattttgatattttactag 13581775  T
Q  318 tgtgtttcagccaaacactatgtgcaaacagcaaatttcat 358  Q
    ||||||| ||||||||||||| ||  ||||| |||||||||    
T  13581776 tgtgtttaagccaaacactatatgtgaacagtaaatttcat 13581816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 13589632 - 13589521
Alignment:
Q  227 agttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattggtgtgtttca 326  Q
    |||||||||| ||||| | | || ||||||||| || ||||||| || |||  ||||||| || ||||||| ||||| |||  |||| | ||||||||||    
T  13589632 agttaactgctgaagtactgtggcagttaactaccgtcggttaactttcgcggtagttaactgccgaagggatattttggtattttactagtgtgtttca 13589533  T
Q  327 gccaaacactat 338  Q
    ||||||||||||    
T  13589532 gccaaacactat 13589521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 5103144 - 5103186
Alignment:
Q  312 tattggtgtgtttcagccaaacactatgtgcaaacagcaaatt 354  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  5103144 tattggtgtgtttcagccaaacactatgtgcgaacaacaaatt 5103186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 40334681 - 40334529
Alignment:
Q  19 aaaacacgaaattaaataaaatcatatgtaataacattaacaattgatacacacaattttgtcttaagtgccattaattaaatatcaaaattcatggtcc 118  Q
    |||||||||||| |||||||||||||||||| |   |||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||     
T  40334681 aaaacacgaaataaaataaaatcatatgtaacagtgttaacaattgatacacacaattttgtcttacgtgcc----attaaatatcaaaattcatggtca 40334586  T
Q  119 tcaaataaatgacaccatatcattctcccccattaaaattgagtcaatcatttcctta 176  Q
    ||| |||||||| ||||||||||| | | ||||||||||||||||||| |||||||||    
T  40334585 tcagataaatgataccatatcatt-ttcgccattaaaattgagtcaattatttcctta 40334529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 40335036 - 40335144
Alignment:
Q  58 acaattgatacacacaattttgtcttaagtgccattaattaaatatcaaaattcatggtcctcaaataaatgacaccatatcattctcccccattaaaat 157  Q
    ||||||||||||| |||||||||||||||||||||||    ||||||||||||||||||||||| |||||||| ||||||||||| | ||| ||||||||    
T  40335036 acaattgatacactcaattttgtcttaagtgccatta----aatatcaaaattcatggtcctcagataaatgataccatatcatt-ttccctattaaaat 40335130  T
Q  158 tgagtcaatcattt 171  Q
    ||||||||| ||||    
T  40335131 tgagtcaattattt 40335144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 357
Target Start/End: Complemental strand, 53449353 - 53449214
Alignment:
Q  218 ttccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattgg 317  Q
    |||||| | ||||||||||||||||||||||| ||||||||  | || ||||| ||||||   |||||| | |||| | |||||||||||  |||| ||     
T  53449353 ttccgcggaagttaactgccgaagttccgcggcagttaacttcctccagttaacttccgcggcagttaactatcgaggaggtatttcggtattttactga 53449254  T
Q  318 tgtgtttcagccaaacactatgtgcaaacagcaaatttca 357  Q
    ||| ||| ||||| | ||||||||  |||||||| |||||    
T  53449253 tgttttttagccatatactatgtgtgaacagcaattttca 53449214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 2830487 - 2830336
Alignment:
Q  19 aaaacacgaaattaaataaaatcatatgtaataacattaacaattgatacacacaattttgtcttaagtgccattaattaaatatcaaaattcatggtcc 118  Q
    |||||||||||| ||||||||||||||| |||||  |||||||||||| ||||| |||||||||||||||||     |||||||| ||||||||||||||    
T  2830487 aaaacacgaaataaaataaaatcatatgaaataatgttaacaattgatccacactattttgtcttaagtgcc----gttaaatataaaaattcatggtcc 2830392  T
Q  119 tcaaataaatgacaccatatcattctcccccattaaaattgagtcaatcatttcctt 175  Q
    ||| |||||||| || |||||||| |   ||||||||||||||||||| ||||||||    
T  2830391 tcagataaatgatactatatcatt-tttgccattaaaattgagtcaattatttcctt 2830336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 2830865 - 2830977
Alignment:
Q  58 acaattgatacacacaattttgtcttaagtgccattaattaaatatcaaaattcatggtcctcaaataaatgacaccatatcattctcccccattaaaat 157  Q
    ||||||||| ||||||||||||||| |||||||||||    |||||||||||||||| ||||||||||||||| ||||||||||| | ||| ||||| ||    
T  2830865 acaattgatgcacacaattttgtctcaagtgccatta----aatatcaaaattcatgatcctcaaataaatgataccatatcatt-ttccctattaagat 2830959  T
Q  158 tgagtcaatcatttcctt 175  Q
    ||||||||| ||||||||    
T  2830960 tgagtcaattatttcctt 2830977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 48343391 - 48343314
Alignment:
Q  219 tccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaagg 296  Q
    ||||| ||||||||||| |||||||||  ||||||||||  ||||||||||||||||||   ||||||||||||||||    
T  48343391 tccgcggcagttaactgtcgaagttccatggtagttaaccgtcgccggttaatttccgctgcagttaattgtcgaagg 48343314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 27297629 - 27297680
Alignment:
Q  227 agttaactgccgaagttccgcggtagttaactatcgccggttaatttccgca 278  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  27297629 agttaactgccgaagttccgcgagagttaactgtcgccggttaatttccgca 27297680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 22935501 - 22935449
Alignment:
Q  225 gcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgc 277  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  22935501 gcagttaactgccgaagttccgcggtagttaactgccgccgattaacttccgc 22935449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 53644428 - 53644480
Alignment:
Q  218 ttccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaa 270  Q
    |||||| |||||||| | |||||||||||||||||||||||| || |||||||    
T  53644428 ttccgcggcagttaatttccgaagttccgcggtagttaactaccgtcggttaa 53644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 6842588 - 6842498
Alignment:
Q  218 ttccgcagcagttaactgccgaagtt-ccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggt 307  Q
    |||||| |||||||||||||||| || || ||| ||||||||   ||||||||| |||| |   ||||||||| |||||||||||||||||    
T  6842588 ttccgcggcagttaactgccgaaatttcctcggcagttaactgcagccggttaacttcctcggcagttaattgccgaaggggtatttcggt 6842498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 44890390 - 44890305
Alignment:
Q  219 tccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttc 304  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||| | |||||| |  ||||||||||||||    
T  44890390 tccgcggcagttaactgccgaagttccgcggtagttaactattgtcggttaacttccgcgacagttaactaccgaaggggtatttc 44890305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 12233748 - 12233701
Alignment:
Q  281 agttaattgtcgaaggggtatttcggtgctttattggtgtgtttcagc 328  Q
    |||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  12233748 agttaactgtcgaaggggtatttcggtcttttattagtgtgtttcagc 12233701  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 4879917 - 4880005
Alignment:
Q  218 ttccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcg-aaggggtatttcg 305  Q
    |||||||| |||||| |||||||||||||||||||||||||| || | ||||| |||| ||| |||||| || || |||||||||||||    
T  4879917 ttccgcagtagttaattgccgaagttccgcggtagttaactaccgtcagttaacttccacaacagttaactgccgaaaggggtatttcg 4880005  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 41459120 - 41459195
Alignment:
Q  95 attaaatatcaaaattcatggtcctcaaataaatgacaccatatcattctcccccattaaaattgagtcaatcattt 171  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||| || | | ||||||||||||||||||| ||||    
T  41459120 attaaatatcaaaattcatggtcctcacataaatgataccacatcctt-ttcgccattaaaattgagtcaattattt 41459195  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 48359913 - 48360002
Alignment:
Q  218 ttccgcagcagttaactgccgaagttccgcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggt 307  Q
    |||||| |||||||||||||||||||||||| |||||||||  |||| |||  ||||| ||| |||||| |   ||||| ||||||||||    
T  48359913 ttccgcggcagttaactgccgaagttccgcgatagttaactgccgcctgttcttttccacaacagttaactactgaaggagtatttcggt 48360002  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 33081048 - 33080960
Alignment:
Q  218 ttccgcagcagttaactgccgaagttcc-gcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcg 305  Q
    |||||| | ||||||||||||||||| | ||||||||||||||  ||  ||||| |||||||  |||||| |||||| || ||||||||    
T  33081048 ttccgcggtagttaactgccgaagtttctgcggtagttaactacagcacgttaacttccgcagcagttaactgtcgagggtgtatttcg 33080960  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 140166 - 140276
Alignment:
Q  219 tccgcagcagttaactgccgaagttcc-gcggtagttaactatcgccggttaatttccgcaatagttaattgtcgaaggggtatttcggtgctttattgg 317  Q
    ||||||| ||||||||| |||||||   | |||||| |||| ||| |||||||||||||   ||||||| ||| ||||| |||||||| |  |||| |||    
T  140166 tccgcagtagttaactgtcgaagtttttgtggtagtcaactgtcgtcggttaatttccgttgtagttaactgttgaaggtgtatttcgatattttactgg 140265  T
Q  318 tgtgtttcagc 328  Q
    |||||||||||    
T  140266 tgtgtttcagc 140276  T

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