View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_1 (Length: 831)
Name: NF7309_low_1
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 241 - 559
Target Start/End: Complemental strand, 25899017 - 25898695
Alignment:
| Q |
241 |
taatagaaaaacataactgacaaagtgaacaaagttctgcaacttttttggctatatattctacttatagaactctatttcaacttgaactataataaca |
340 |
Q |
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| T |
25899017 |
taataggaaaacatgactgacaaagtgcacaatgttctccaactttcttagctatatattctacttatagaactctatttcaacttgaactataatcaca |
25898918 |
T |
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| Q |
341 |
at-gcatcatggtcatttagcacactcctaaaagtttcaatttatcataacttactgatttattcattcaatatttagttggttactaaagcatgttag- |
438 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25898917 |
attgcatcatggtcatttagcacactcctaaaagtttcaaattatcataacttaccgatttagttattcaatatttagttggttactaaagcatgttagt |
25898818 |
T |
|
| Q |
439 |
--nnnnnnnncttctagcacttccccaatatgatctcgatcaatgtcattccggacacacaagagagcattacattgcaggattggaatacaaccaaaaa |
536 |
Q |
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| T |
25898817 |
tttttttttttttctagcacttccccaatatgatctcgatcaatgtcattcccgacacacaagagagcattacattgcaggattggaataccgccaaaaa |
25898718 |
T |
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| Q |
537 |
atatgagtgcaaacttatcactt |
559 |
Q |
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| T |
25898717 |
atatgactgcaaacttatcactt |
25898695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 560 - 821
Target Start/End: Complemental strand, 25898651 - 25898390
Alignment:
| Q |
560 |
caaaattctaaaagattgtaaattgcgtcaaggggatagcttggtctttgatcttgaggaccctactaacacactatttgttgagattgtgcgccagaaa |
659 |
Q |
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| T |
25898651 |
caaatttctgaaggatagtaaattgcgtcaaggggatagtttggtctttgatcttgaggatcctcctaactcactatttgttgagattgttcgccagaaa |
25898552 |
T |
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| Q |
660 |
agtcgtcattagacttacaagcatatcacatgaggttcctcttcaagtgttctattttgatgtaaatacctgttatgcctcaaacaatggcattgtgttt |
759 |
Q |
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| T |
25898551 |
ggtcgtcattagacttgcaagcatatcatataaggttcctcttcatgtgttttattttgttgtaaatacctgttatgcctcagacaatggcattgtgttt |
25898452 |
T |
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| Q |
760 |
tgagttttgctaccatcatactcctaactcctatgtttttataagttgtgtgctttaatatt |
821 |
Q |
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| T |
25898451 |
tgagtttttctcccatgatactcctaattcctatgttcctataagttgtgtgctttaatatt |
25898390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 51553024 - 51553161
Alignment:
| Q |
19 |
agctggtcctgaaggacatgaagcagtggcagctagagtccaagcagaccgtgctatgttcgccaattgccgttttgaaggcttccacgacacactatac |
118 |
Q |
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| T |
51553024 |
agctggtcctgaaggacatcaagcagtagcagctagagtccaagcagatcgtgctgtgtttgccaactgccgttttgaaggcttccaagacacgctatac |
51553123 |
T |
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| Q |
119 |
acagtggcacatagacaattccatcgttgctgcatcat |
156 |
Q |
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| T |
51553124 |
acagtggcacatagacaattcttccgtagctgcatcat |
51553161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 746 - 780
Target Start/End: Original strand, 6230039 - 6230073
Alignment:
| Q |
746 |
atggcattgtgttttgagttttgctaccatcatac |
780 |
Q |
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| T |
6230039 |
atggcattgtgttttgagttttgctaccatgatac |
6230073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 448 - 563
Target Start/End: Complemental strand, 37423242 - 37423127
Alignment:
| Q |
448 |
ttctagcacttccccaatatgatctcgatcaatgtcattccggacacacaagagagcattacattgcaggattggaatacaaccaaaaaatatgagtgca |
547 |
Q |
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|||||||||||||||||||||||||| ||||| || ||||||||||||| | | ||||||||| | |||||||||| ||| |||| ||||||| |
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| T |
37423242 |
ttctagcacttccccaatatgatctccatcaacgtacttccggacacacagtacaccattacattagtgaattggaatacccaaaaacaatacgagtgca |
37423143 |
T |
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| Q |
548 |
aacttatcacttcaaa |
563 |
Q |
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| T |
37423142 |
aacttaccacttcaaa |
37423127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 16488380 - 16488309
Alignment:
| Q |
239 |
ggtaatagaaaaacataactgacaaagtgaacaaagttctgcaacttttttggctatatattctacttatag |
310 |
Q |
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| T |
16488380 |
ggtaataggaaaacatgactggtaaagtgcacaatgttctgcaacttttttagctatatatattacttatag |
16488309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 21814530 - 21814601
Alignment:
| Q |
239 |
ggtaatagaaaaacataactgacaaagtgaacaaagttctgcaacttttttggctatatattctacttatag |
310 |
Q |
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|||||||| ||||||| |||| |||||| |||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
21814530 |
ggtaataggaaaacatgactggtaaagtgcacaatgttctgcaacttttttagctatatatattacttatag |
21814601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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