View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_10 (Length: 474)
Name: NF7309_low_10
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 2503624 - 2503287
Alignment:
| Q |
16 |
caaatttagtacttgttgtgaacatatagcatataacatttgcaatggatcctccagtgaccataaaagctgaaatacttgaagctactttcaagtctaa |
115 |
Q |
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| T |
2503624 |
caaatttagtacttgttgtgaacatatagcatataacatttgcaatggatcctccagtgaccataaaagctgaaatacttgaagctactttcaagtctaa |
2503525 |
T |
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| Q |
116 |
accagctacaattgttagtataggtatgaaaattccaccaccacctattccaccagcacttgatatcgatgaagctatgaagcaaagaattccagctacc |
215 |
Q |
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| T |
2503524 |
accagctacaattgttagtataggtatgaaaattccaccaccacctattccaccagcacttgatatcgatgaagctatgaagcaaagaattccagctacc |
2503425 |
T |
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| Q |
216 |
accaaagggactgagatttgcaactgtgattcatggaatccttgtgtaacattttttagctgagaaattttgtctagaacatggttaatattgagtatag |
315 |
Q |
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| T |
2503424 |
accaaagggactgagatttgcaactgtgattcatggaatccttgtgtaacattttttagctgagaaattttgtctagaacatggttaatattgagtatag |
2503325 |
T |
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| Q |
316 |
ttgaaaagggctttgtttgttttgcatttgaaggattg |
353 |
Q |
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| T |
2503324 |
ttgaaaagggctttgtttgttttgcatttgaaggattg |
2503287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 2503257 - 2503180
Alignment:
| Q |
383 |
tataatactttcagttctcattttgcttttgagagaattttagcaatgataaagagtgaagtagtgaggttaggtgtg |
460 |
Q |
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| T |
2503257 |
tataatacttttagttctcattttgcttttgagagaattttagcaatgataaagagtgaagtagtgaggttaggtgtg |
2503180 |
T |
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