View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_11 (Length: 446)
Name: NF7309_low_11
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 435
Target Start/End: Original strand, 25588418 - 25588821
Alignment:
| Q |
30 |
gattgactttcgatttctggtgccaaatttcctcttcaaacaaaagcgctcctttcaacttagcttcaacattcttattttatttttgcatatcttcaac |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25588418 |
gattgactttcgatttctggtgccaaatttcctcttcaaacaaacgcgctcctttcaacttagcttcaacattcttcttttatttttgcatatcttcaac |
25588517 |
T |
|
| Q |
130 |
ataatcaagagaaacaattatttgttgaattttatccaagaatagtaactactttgacattaggctacacattgccaaacacatttctatttcaatccct |
229 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25588518 |
ataatcaagagaaacaattctttgttgaatattatccaagaatagtaactactttgacattaggctacacattgccaaacacatttctatttcaacccct |
25588617 |
T |
|
| Q |
230 |
aagtacgattttgagattctaagttttctgttgagaacatacataattgcaatccttgtgagaattccacattttcataaatttgaaagaggaggcaaat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25588618 |
aagtacgattttgagattctaagttttctgttgagaacatacataaatgcaatccttgtgagaattccacattttcataaatttgaaagaggaggcaaat |
25588717 |
T |
|
| Q |
330 |
atagtatcactcatagaccaatcccatcctaatggggtaacaatgaaaataaaccttagtgagggtaatgtaagtggaagaatctcaagtgtgtctatca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
25588718 |
atagtatcactcatagaccaatcccatcctaatggggtaacaatgaaaataaaccttagtgagggtaatgtaagtgtaagaatctcaa--gtgtctatca |
25588815 |
T |
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| Q |
430 |
attctt |
435 |
Q |
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|||||| |
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| T |
25588816 |
attctt |
25588821 |
T |
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