View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_low_13 (Length: 444)

Name: NF7309_low_13
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_low_13
NF7309_low_13
[»] chr8 (1 HSPs)
chr8 (10-439)||(25588813-25589242)
[»] chr5 (1 HSPs)
chr5 (10-439)||(26374028-26374457)
[»] chr6 (5 HSPs)
chr6 (11-237)||(14127350-14127576)
chr6 (241-432)||(14127113-14127304)
chr6 (12-201)||(12917333-12917522)
chr6 (11-190)||(8758022-8758201)
chr6 (274-343)||(12927368-12927437)
[»] chr3 (4 HSPs)
chr3 (11-237)||(17918498-17918724)
chr3 (241-439)||(17918770-17918968)
chr3 (11-201)||(15428729-15428919)
chr3 (274-343)||(15429010-15429079)
[»] chr2 (2 HSPs)
chr2 (13-236)||(24081380-24081602)
chr2 (268-411)||(24081164-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (11-201)||(33319-33509)
scaffold0071 (274-343)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 25588813 - 25589242
Alignment:
Q  10 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588813 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 25588912  T
Q  110 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588913 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 25589012  T
Q  210 tagcttcaccattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589013 tagcttcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 25589112  T
Q  310 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589113 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcc 25589212  T
Q  410 tccacatcaattttttcaatattcttcgac 439  Q
    ||||||||||||||||||||||| ||||||    
T  25589213 tccacatcaattttttcaatatttttcgac 25589242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 26374028 - 26374457
Alignment:
Q  10 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374028 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 26374127  T
Q  110 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374128 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 26374227  T
Q  210 tagcttcaccattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374228 tagcttcaccattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 26374327  T
Q  310 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcc 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26374328 aacctgttcaagtgcgtattttctagccaacgccatttcttccttctccaaaacaaaaaaacctccctcattgtttttatctccctcattaattttttcc 26374427  T
Q  410 tccacatcaattttttcaatattcttcgac 439  Q
    ||||||||||||||||||||||| ||||||    
T  26374428 tccacatcaattttttcaatatttttcgac 26374457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 14127576 - 14127350
Alignment:
Q  11 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 110  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14127576 gacatcatgtcttctttaccgggaaaaaataaaatcacattatctccacctctaggtactacacgaacattatcaaagccagcatcaatgattttctgtt 14127477  T
Q  111 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 210  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14127476 gaacaattggaataaattgcccattcagcaatttagccaacgcctctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 14127377  T
Q  211 agcttcaccattcaccttgggtgcatc 237  Q
     ||||||||| ||||||||||||||||    
T  14127376 tgcttcaccaatcaccttgggtgcatc 14127350  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 241 - 432
Target Start/End: Complemental strand, 14127304 - 14127113
Alignment:
Q  241 aatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 340  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  14127304 aatatcaccagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgctcaagtgcgtgttttctaaccaac 14127205  T
Q  341 gccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccacatcaattttttcaatatt 432  Q
     ||| |||||||||||||||  ||  || |||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||    
T  14127204 accatttcttccttctccgattcaataatacctccatcattgtttttttctccctcattaattttttccttcacaacaattttttcactatt 14127113  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 12917333 - 12917522
Alignment:
Q  12 acatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttg 111  Q
    ||||||| |||||||| ||||| ||||| | || |||||||||||||||||||||||  ||||||| || |||||| ||||||||||||||||| |||||    
T  12917333 acatcatatcttctttgccgggacaaaaaagaaccacattatctccacctctaggtaacacacgaatattatcaaaaccagcatcaatgattttttgttg 12917432  T
Q  112 aacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 201  Q
     ||||| |||||| | ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  12917433 cacaataggaatatagtccccattcagcactcttgcaaacgcccctttacttgcccaaacaacatcttcattatcggaaataaacttgcg 12917522  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 8758022 - 8758201
Alignment:
Q  11 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 110  Q
    ||||||||||| ||||| || || |||||||||| ||| ||||  || |||||||| |  || || |||| |||||| ||  ||||||| ||||| ||||    
T  8758022 gacatcatgtcgtcttttcctggacaaaataaaaccacgttattgccccctctaggcagcacccggacattatcaaacccgacatcaataattttttgtt 8758121  T
Q  111 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaa 190  Q
    | |||   || ||||| || ||||||| |||| | |||||||| ||||||||||||||||||||||| ||||||||||||    
T  8758122 gcacagaaggtataaattctccattcaacactcttgccaacgcacctttacttgcccaaacaacatcatcattatcagaa 8758201  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 12927368 - 12927437
Alignment:
Q  274 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 343  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||| || |  |||||||||||||||    
T  12927368 ctccctttcctcctcactaaccttagcatctaatttaacctgttcaagagcctgctttctagccaacgcc 12927437  T

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Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 17918498 - 17918724
Alignment:
Q  11 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  17918498 gacatcatgtcttctttaccggagcaaaataaaatcacattatctccacctctaggtactacacgaacattttcaaagccaacatcaatgattttctgtt 17918597  T
Q  111 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 210  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  17918598 gaacaattggaataaaatccccattcagcactgtagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgatacttgcgcgtgacttt 17918697  T
Q  211 agcttcaccattcaccttgggtgcatc 237  Q
     ||||||||| ||||||||||||||||    
T  17918698 tgcttcaccaatcaccttgggtgcatc 17918724  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 241 - 439
Target Start/End: Original strand, 17918770 - 17918968
Alignment:
Q  241 aatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 340  Q
    |||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||    
T  17918770 aataacaccagctccgccgcttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcgcgttttctagccaac 17918869  T
Q  341 gccaattcttccttctccgaaacagaaaaacctccctcattgtttttatctccctcattaattttttcctccacatcaattttttcaatattcttcgac 439  Q
    |||| |||||||||||||||| ||  || |||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||||||| |||| ||||||    
T  17918870 gccatttcttccttctccgaatcaataatacctccatcattgtttttttctccctcgttaattttttccttcacaacaattttttcactatttttcgac 17918968  T

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Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 15428729 - 15428919
Alignment:
Q  11 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 110  Q
    |||||||| || ||||| ||| | |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||    
T  15428729 gacatcatatcatctttgccgagacaaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgtt 15428828  T
Q  111 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 201  Q
    | ||||| |||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  15428829 gcacaataggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 15428919  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 15429010 - 15429079
Alignment:
Q  274 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 343  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  15429010 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 15429079  T

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Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 24081602 - 24081380
Alignment:
Q  13 catcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttga 112  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||| ||||||||||  || ||||||| ||| || |||||||||||||||||||||||     
T  24081602 catcatgtcttctttacggggacaaaataaaacctcattatctcctcctctaggtaacacccgaacattatcgaaaccagcatcaatgattttctgttgc 24081503  T
Q  113 acaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttag 212  Q
    | ||| |||||||| | | |||||| |||| | ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | |    
T  24081502 ataataggaataaagttctcattcaacactcttgccaac-accctttacttgcccaaacaacatcatcattatcagaatgaaacttgcgcgtaacaattg 24081404  T
Q  213 cttcaccattcaccttgggtgcat 236  Q
    |  ||||||||||||||| |||||    
T  24081403 cgccaccattcaccttggatgcat 24081380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 268 - 411
Target Start/End: Complemental strand, 24081306 - 24081164
Alignment:
Q  268 tacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaa 367  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |  |||||||||||| |||  ||||||||||||| | ||  |    
T  24081306 tactttctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcctgctttctagccaacaccatctcttccttctccgtatcaaga 24081207  T
Q  368 aaacctccctcattgtttttatctccctcattaattttttcctc 411  Q
    |  |||||||||||| |||| ||||||| ||| |||||||||||    
T  24081206 agtcctccctcattgattttttctcccttatt-attttttcctc 24081164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 33509 - 33319
Alignment:
Q  11 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 110  Q
    |||||||| || ||||| ||| | |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||    
T  33509 gacatcatatcatctttgccgagacaaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgtt 33410  T
Q  111 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 201  Q
    | ||||| |||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  33409 gcacaataggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 33319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 33228 - 33159
Alignment:
Q  274 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 343  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  33228 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 33159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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