View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_14 (Length: 437)
Name: NF7309_low_14
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_14 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 1524657 - 1524535
Alignment:
| Q |
152 |
ccatatcagtatacaataaagaaacaaaacaagattttgaaaacaacccatttcatagaatcacaaaaagtttcaatcttgcctttgaaactgttcagtg |
251 |
Q |
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| T |
1524657 |
ccatatcagtatacaataaagaaacaaaacaagattttgaaaacaacccatttcatagaatcacaaaaagtttcaatcttgcctttgaaactgttcagtg |
1524558 |
T |
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| Q |
252 |
tcaatgaacttcaaactcagctg |
274 |
Q |
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| T |
1524557 |
tcaatgaacttcaaactcagctg |
1524535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1524792 - 1524678
Alignment:
| Q |
1 |
tcatatatatttgattcaacaaaaatcatattagtatacaataaagaaacaaaatcaatggttataaataaacttaccaagttgtttcagctcacgaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1524792 |
tcatatatatttgattcaacaaaaatcatattagtatacaataaagaaacaaaatcaatggttataaataaacttgccaagttgtttcagctcacgaagc |
1524693 |
T |
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| Q |
101 |
ctgcaatatatacac |
115 |
Q |
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| T |
1524692 |
ctgcaatatatacac |
1524678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 2215283 - 2215356
Alignment:
| Q |
199 |
ccatttcatagaatcacaaaaagtttcaatcttgccttt----gaaactgttcagtgtcaatgaacttcaaact |
268 |
Q |
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| T |
2215283 |
ccatttcatagaatcacaaaaagtttcaatcttgcctctgaaggaaaccgttcaatgtcaatgaacttcaaact |
2215356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 2215437 - 2215469
Alignment:
| Q |
344 |
actttctttctaactattaaattcaacatatac |
376 |
Q |
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| T |
2215437 |
actttctttctaactattaaactcaacatatac |
2215469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 3740 - 3813
Alignment:
| Q |
199 |
ccatttcatagaatcacaaaaagtttcaatcttgccttt----gaaactgttcagtgtcaatgaacttcaaact |
268 |
Q |
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| T |
3740 |
ccatttcatagaatcacaaaaagtttcaatcttgcctctgaaggaaaccgttcaatgtcaatgaacttcaaact |
3813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 3894 - 3926
Alignment:
| Q |
344 |
actttctttctaactattaaattcaacatatac |
376 |
Q |
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| T |
3894 |
actttctttctaactattaaactcaacatatac |
3926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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