View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_15 (Length: 434)
Name: NF7309_low_15
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 33 - 419
Target Start/End: Complemental strand, 32605034 - 32604636
Alignment:
| Q |
33 |
caaaccaatctggaaccacatgaaagcattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatata---------- |
122 |
Q |
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| T |
32605034 |
caaaccaatatggaaccacatgaaagcattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatatatgttggaaca |
32604935 |
T |
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| Q |
123 |
---gaatatactagtgcgtgagttgaaaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtga |
219 |
Q |
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| T |
32604934 |
ctagaatatactagtgcgtgagttgaaaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtga |
32604835 |
T |
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| Q |
220 |
gacacaagggatgtccatttttatgaatggcatatgacacgatcaacttgatcaacagagacgcgtgccgtcgtttaatttgtcttgggaatttacnnnn |
319 |
Q |
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| T |
32604834 |
gacacaagagatgtccatttttatgaatggcatatgacacgatcaacttgatcaacagagacgcgtgccgtcgtttaatttgtcttgggaatttactttt |
32604735 |
T |
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| Q |
320 |
nnngaaaatgttggtttcaacccatgtcaaatctcgtcacacattttgctaacatcattgtacgttcgaccttccattttctatcgtatgtgcaatctga |
419 |
Q |
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| T |
32604734 |
tttg-aaatgttggtttcaacccatgtcaaatctcgtcgcacattttgctaacatcattgtgcgttcgaccttccattttctatggtatgtgcaacctga |
32604636 |
T |
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