View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_18 (Length: 405)
Name: NF7309_low_18
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 31944331 - 31944166
Alignment:
| Q |
19 |
ttgttgtcattgcatttgcacctatcaactcaagttcaacttcaagtgcactagtatttcatcaagtttccaaattatgctttggat--agaggtgagat |
116 |
Q |
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| T |
31944331 |
ttgttgtcattgcatttgcacctatcaactcaagttcaacttcaagtgcactagtatttcatcaagtttccaaattatgctttggatagagaggtgagat |
31944232 |
T |
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| Q |
117 |
taatgttttgattgataataccagataacccgttccaaatatttgaagcaagtgtacattgacaaa |
182 |
Q |
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| T |
31944231 |
taatgttttgattgataataccagagaacccgttccaaatatttgaagcaagtgtacattgacaaa |
31944166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 31944134 - 31944022
Alignment:
| Q |
178 |
acaaagggagcacatacatggaatatagcaacctctaatcaatatattatcatcggttggaaaatttattgtgtaacatccttcaccattgctatgaaac |
277 |
Q |
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| T |
31944134 |
acaaagggagcacataaatggaatatagcaacctctaatcaatatattatcatcggttgg-caatttattgtgtaacatccttcacaattgctatgaaac |
31944036 |
T |
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| Q |
278 |
ctttaattttggaa |
291 |
Q |
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| T |
31944035 |
ctttaattttggaa |
31944022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 314 - 388
Target Start/End: Complemental strand, 31944022 - 31943948
Alignment:
| Q |
314 |
actgatagtcatgttgaaacttgtatcattttctaaaagtgaacagtgggagaatcaatgtattgttattatttt |
388 |
Q |
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| T |
31944022 |
actgatagtcatgttgaaacttgtatcattttctaaaagtgaacaatgggagaatcaatgtattgttattgtttt |
31943948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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