View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_20 (Length: 383)
Name: NF7309_low_20
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 31002010 - 31002367
Alignment:
| Q |
20 |
ggcttaaccatggtcgtcgaattgagatccgattcaaaatttaaatacaaaatcttgagtttgaaagttgaacgtcacaaggatattagtcttgacattt |
119 |
Q |
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| T |
31002010 |
ggcttaaccatggtcgtcgaattgagatccgattcaaaatttaaatacaaaatcttgagtttgaaagttgaacgtcacaaggatattagtcttgacattt |
31002109 |
T |
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| Q |
120 |
attcttcaatctctatttttggtgattggacataattagtatgcagtgatacttttatttattgcatatcatcatctgctgaatattaatgcaattgtac |
219 |
Q |
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| T |
31002110 |
attcttcaatctctatttttggtgattggacataattagtatgcagtgatacttttatttattgcatatcatcatctgctgaatattaatgcaattgtac |
31002209 |
T |
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| Q |
220 |
atgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaa |
319 |
Q |
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| T |
31002210 |
atgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaa |
31002309 |
T |
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| Q |
320 |
tgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctcac |
377 |
Q |
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| T |
31002310 |
tgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctcac |
31002367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 377
Target Start/End: Original strand, 30998970 - 30999203
Alignment:
| Q |
148 |
gacataattagtatgcagtgatacttttatttattgcatat----catcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgca |
243 |
Q |
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| T |
30998970 |
gacatatttaatatggagtgatacttttatttattgcatatatatcattatctgctaaaaattaatgcaattgtacatgactgcttatctaatctgtgca |
30999069 |
T |
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| Q |
244 |
gagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcattt |
343 |
Q |
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| T |
30999070 |
gagaatatccctggaatttcgtctcttcatatagaagaccttcgaactgttgttcgcggagacgatcctcaaaatatacagctctcattggaatgcattt |
30999169 |
T |
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| Q |
344 |
ccaaagttaccaaagcaaattaccttcttctcac |
377 |
Q |
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| T |
30999170 |
ccaaggttaccaaagcaaattaccttcttctcac |
30999203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 186 - 377
Target Start/End: Original strand, 30992041 - 30992232
Alignment:
| Q |
186 |
tatcatcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagacctt |
285 |
Q |
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| T |
30992041 |
tatcatcatctgccgaatattaatgcaattgtacatgcctgcgtatctaatctgtgcagagaacatcccagaaatttcgtctgttcatatggaagacctt |
30992140 |
T |
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| Q |
286 |
cgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcttctcac |
377 |
Q |
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| T |
30992141 |
cgaactgttgtacgcagaaacgatcagccaacaatgcagcttgcactggaatgcatttccgaggttaacaaagcaaattaccttcttctcac |
30992232 |
T |
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