View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_22 (Length: 347)
Name: NF7309_low_22
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 51402365 - 51402057
Alignment:
| Q |
1 |
tatgaatgatcgatcgatcgatactaagaaaaaaggacactggtgttagttacataatagcnnnnnnngggtatcagaaactaactagcttgttgttacg |
100 |
Q |
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| T |
51402365 |
tatgaatgatcgatcgatcgatactaagaaaaaaggacactggtgttagttacataatagcaaaaaaagggtatcagaaactaactagcttgttgttacg |
51402266 |
T |
|
| Q |
101 |
ttatatacgtggcttacagataagaccaaagaaagaagttaatgtcacagcttatagtagtgagattcaaaagaacaagcggaagtatttaaacgaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402265 |
ttatatacgtggcttacagataagaccaaagaaagaagttaatgtcacagctta--gtagtgagattcaaaagaacaagcggaagtatttaaacgaaaac |
51402168 |
T |
|
| Q |
201 |
catgccatatactgcttttctacgtgtggtgtttatcttttgactttgtttctttactatattcagcattttcaaattaaatgtaactaattaactatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402167 |
catgccatatactgcttttctacgtgtggtgtttatcttttgactttgtttctttactatattcagcattttcaaattaaatgtaactaattaactatta |
51402068 |
T |
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| Q |
301 |
attactccttt |
311 |
Q |
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||||||||||| |
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| T |
51402067 |
attactccttt |
51402057 |
T |
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