View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_23 (Length: 338)
Name: NF7309_low_23
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 33051773 - 33052090
Alignment:
| Q |
6 |
gtcaaattaagtctagacccttcacccctttttgtttcgtcctggctagtctagttaatt-accagaaacaaagtttctaaatctcttgggggtaaccat |
104 |
Q |
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| T |
33051773 |
gtcaaattaagtctagaaccttcacccctttttgtttcgtcctggctagtctagttaatttaccagaaacaaagtttctaaatctcttgggggtaaccat |
33051872 |
T |
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| Q |
105 |
aaaaactccaagttatttgcacactttataccaaatattattccaaacttcgcacaaagaataaatgttgttccaattcttgattccaagagcacaaaca |
204 |
Q |
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| T |
33051873 |
aaaaactccaagttatttgcacactttatacaaaatattaatccaaacttcgcacaaagaataaatgttgttccaattcttgattccaagagcacaaaca |
33051972 |
T |
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| Q |
205 |
caagtagtagcattcatatccctaacgacctagttaaaagtttacctaaacttaaccaagcaaaaactattaccctggaggagccaaaacttccattgtt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
33051973 |
caagtagtagcattcatatccctaacgacctagttaaaagtttacctaaaatcaaccaagcaaaaactattacactggaggagccaaaacttccattctt |
33052072 |
T |
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| Q |
305 |
tatgtaatacccaagtga |
322 |
Q |
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||||||||||||||||| |
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| T |
33052073 |
catgtaatacccaagtga |
33052090 |
T |
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