View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_25 (Length: 333)
Name: NF7309_low_25
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 44603158 - 44602845
Alignment:
| Q |
1 |
gtgttcttaggtgtgtatgactgtttgacacataactattgtacaattttagttcgtaggaattatagaaaattattaatagttattataatttgaggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44603158 |
gtgttcttaggtgtgtatgactgtttgacacataactattgtacaattttagttcgtaggaattatagaaaattattaatagttattataatttgaggta |
44603059 |
T |
|
| Q |
101 |
ttgatctcacattgagcattctaccaccaaattagctaatccatcaaggaaagttatagtagtacatcatattccctccccaatatacggatatcctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44603058 |
ttgatctcacattgagcattctaccaccaaattagctaatccatcaaggaaagttatagtagtacatcatattccctccccagtatacggatatcctcca |
44602959 |
T |
|
| Q |
201 |
aacatttgacttctcaaaatatctttgattctaacnnnnnnnnnnnnnnnnntaataataaattggtagtcaaggttattttgtgaagttcagttgtttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||| |
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| T |
44602958 |
aacatttgacttctcaaaatatctttgattctaac-aaatttttttaaaaaataataataaattggtagtcaagattattttgagaagttcagttttttg |
44602860 |
T |
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| Q |
301 |
cgagaatagaggtat |
315 |
Q |
| |
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||||||||||||||| |
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| T |
44602859 |
cgagaatagaggtat |
44602845 |
T |
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