View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_27 (Length: 308)
Name: NF7309_low_27
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 43607148 - 43606876
Alignment:
| Q |
17 |
agaaaatgaacagaggggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagt |
116 |
Q |
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| T |
43607148 |
agaaaatgaacagaggggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagt |
43607049 |
T |
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| Q |
117 |
agcaagtactatgagttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggttnnnnnnnnnnnnnnnnnnnnng |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43607048 |
agcaagtactatgagttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggtt---ctgctgctgctgctgctgg |
43606952 |
T |
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| Q |
217 |
tggtaaccgtagtagtcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttca |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606951 |
tggtaaccgtagtagtcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttca |
43606876 |
T |
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