View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_29 (Length: 279)
Name: NF7309_low_29
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 14999283 - 14999020
Alignment:
| Q |
1 |
acaaagtcaaaactttatagataaaataagaca--gaaaattagaaaatacatgatagaaaataacattagttagataatatgacaaacctgagaatcaa |
98 |
Q |
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| T |
14999283 |
acaaagtcaaaactttatagatcagataagacaaagaaaattagaaaatgcatgaaagaaaataacattagttagataatatgacaaacctgagaatcaa |
14999184 |
T |
|
| Q |
99 |
agttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaattgttgaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14999183 |
agttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaattgttgaa |
14999084 |
T |
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| Q |
199 |
ggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtattctcaaccacaaaac |
262 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14999083 |
ggcatttgcaagcattgatttctccggaagtgtcagtttcctgaagtattgtcaaccacaaaac |
14999020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 257
Target Start/End: Complemental strand, 29468054 - 29467871
Alignment:
| Q |
74 |
ataatatgacaaacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgc |
173 |
Q |
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||||||||||||||||||||||||| || ||| ||||| |||||| || ||| | |||| ||||||| ||||| |||||| | | |||||||||||| |
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| T |
29468054 |
ataatatgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggattgctctctttaactatctccaatgccttgacga |
29467955 |
T |
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| Q |
174 |
gattctctagagacaaattgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtattctcaaccac |
257 |
Q |
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| T |
29467954 |
tgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtattgtcaaccac |
29467871 |
T |
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