View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_low_3 (Length: 723)

Name: NF7309_low_3
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_low_3
NF7309_low_3
[»] chr2 (16 HSPs)
chr2 (20-499)||(28221147-28221630)
chr2 (20-323)||(28214654-28214957)
chr2 (69-306)||(32814336-32814573)
chr2 (83-306)||(32309915-32310138)
chr2 (69-306)||(32305782-32306019)
chr2 (75-306)||(32787130-32787361)
chr2 (83-279)||(32564682-32564878)
chr2 (548-715)||(28220827-28220991)
chr2 (550-715)||(32309616-32309778)
chr2 (550-715)||(32565056-32565218)
chr2 (550-715)||(32814679-32814841)
chr2 (550-704)||(32305494-32305645)
chr2 (548-712)||(28215265-28215417)
chr2 (398-499)||(28215008-28215109)
chr2 (497-550)||(28215192-28215245)
chr2 (497-550)||(28221011-28221064)


Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Complemental strand, 28221630 - 28221147
Alignment:
Q  20 aacagttcgcaataacatgattgcaatgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggct 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28221630 aacagttcgcaataacaggattgcaatgcggccaagatacaaacctttttcatattataatcataaatgcataagtgtaaagtaatttacctaggaggct 28221531  T
Q  120 gactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgttatcgtcaggccttggaatttgatcagttgcctcctggaaa 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28221530 gactgtttcccgtgcattgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgttatcgtcaggccttggaatttgatcagatgcctcctggaaa 28221431  T
Q  220 aacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggaccaccaccctgccatggccatgtccataaataaatcataagtacaaaaatta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28221430 aacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggaccaccaccctgccatggccatgtccataaataaatcataagtgcaaaaatta 28221331  T
Q  320 ttaactttactaaaacattgataccctttaggataaccagcttcgacattttaagaaattttcgaaattctaaaatagcattctccctaactatctttgt 419  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  28221330 ttaactttactaaaacattgatacccttgaggataaccagcttcgacattttaagaaattttcgaaattctaaaattgcattttccctaactatccttgt 28221231  T
Q  420 attttctgtctatcaaaattattcactatacaaggtttccatcgc----aatgttaacaatttaaaacgaaaagaaattttaga 499  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||    |||||||||||||||||||||||||||||||||||    
T  28221230 attttctatctatcaaaattattcaccatacaagttttccatcgcaattaatgttaacaatttaaaacgaaaagaaattttaga 28221147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 28214654 - 28214957
Alignment:
Q  20 aacagttcgcaataacatgattgcaatgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28214654 aacagttcgcaataacatgattgcaatgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggct 28214753  T
Q  120 gactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgttatcgtcaggccttggaatttgatcagttgcctcctggaaa 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28214754 gactgtttcccgtgctttgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgttatcgtcaggccttggaatttgatcagctgcctcctggaaa 28214853  T
Q  220 aacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggaccaccaccctgccatggccatgtccataaataaatcataagtacaaaaatta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| || ||||||| |    
T  28214854 aacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggtcccccaccctgccatggccatgtcgataaataaatcataggtgcaaaaataa 28214953  T
Q  320 ttaa 323  Q
    ||||    
T  28214954 ttaa 28214957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 69 - 306
Target Start/End: Original strand, 32814336 - 32814573
Alignment:
Q  69 tcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtg 168  Q
    ||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  32814336 tcatattatattcatgaatgcataagtgtaaagtaatttaccaaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaattgaagtgtg 32814435  T
Q  169 cgcgtgatgttatcgtcaggccttggaatttgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggac 268  Q
    ||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32814436 cgcataatgctatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcc 32814535  T
Q  269 caccaccctgccatggccatgtccataaataaatcata 306  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  32814536 caccaccctgcgatggccatgtccataaataaatcata 32814573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 83 - 306
Target Start/End: Complemental strand, 32310138 - 32309915
Alignment:
Q  83 taaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgttatc 182  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | | ||||||    
T  32310138 taaatgcataaatgtaaagtaatttaccaaggaggctgactgtttcacgtgcgttgaatcctctaaggttgaagaggtgcagtgtgcgcataaggttatc 32310039  T
Q  183 gtcaggccttggaatttgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggaccaccaccctgccat 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  32310038 gtcaggccttggaatttgatcagttgcctcgtggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccaccaccctgcaat 32309939  T
Q  283 ggccatgtccataaataaatcata 306  Q
    ||||||||||||||||||||||||    
T  32309938 ggccatgtccataaataaatcata 32309915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 69 - 306
Target Start/End: Complemental strand, 32306019 - 32305782
Alignment:
Q  69 tcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtg 168  Q
    ||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||  | |||||||||||||||||||||||||||||||||| |    
T  32306019 tcatattatattcataaatgcataagtgtaaagtaatttatcaaggaggctgactgtttcatgcgcgttgaatcctctaagattgaagaggtgcagtgcg 32305920  T
Q  169 cgcgtgatgttatcgtcaggccttggaatttgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggac 268  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  32305919 cgcgtaatgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactagatagaaaggcc 32305820  T
Q  269 caccaccctgccatggccatgtccataaataaatcata 306  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  32305819 caccaccctgcgatgaccatgtccataaataaatcata 32305782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 75 - 306
Target Start/End: Original strand, 32787130 - 32787361
Alignment:
Q  75 tataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgcgcgtg 174  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |     
T  32787130 tatattcataaatgcataaatgtaaagtaatttaccaaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgtgcata 32787229  T
Q  175 atgttatcgtcaggccttggaatttgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggaccaccac 274  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||     
T  32787230 atgttatcgtcaggccttggaatctgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaatggcccaccag 32787329  T
Q  275 cctgccatggccatgtccataaataaatcata 306  Q
    ||||| ||||||||||| || |||||||||||    
T  32787330 cctgcgatggccatgtcaattaataaatcata 32787361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 83 - 279
Target Start/End: Original strand, 32564682 - 32564878
Alignment:
Q  83 taaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgttatc 182  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | | ||||||    
T  32564682 taaatgcataaatgtaaagtaatttaccaaggaggctgactgtttcacgtgcgttgaatcctctaaggttgaagaggtgcagtgtgcgcataaggttatc 32564781  T
Q  183 gtcaggccttggaatttgatcagttgcctcctggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggaccaccaccctgc 279  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32564782 gtcaggccttggaatttgatcagttgcctcgtggaaaaacgattgcaggctatctcgtctgcctgttaaaactggatagaaaggcccaccaccctgc 32564878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 548 - 715
Target Start/End: Complemental strand, 28220991 - 28220827
Alignment:
Q  548 agacaacgccgggacatgcttgttccacctcctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcata 647  Q
    ||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  28220991 agacaacgccgggacatgcttgttcgacctcctcct---taatcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcata 28220895  T
Q  648 ggaactgtttctatcaccattgtcctccaacagcatggaagcatcacaaccctgattcagtaacacca 715  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  28220894 ggaactgtttctatcaccattgtcctccaacaacaaggaagcatcacaaccctgattcagcaacacca 28220827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 550 - 715
Target Start/End: Complemental strand, 32309778 - 32309616
Alignment:
Q  550 acaacgccgggacatgcttgttccacctcctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcatagg 649  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32309778 acaacgccgggacatgcttgttccacctcctcct---taatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcatagg 32309682  T
Q  650 aactgtttctatcaccattgtcctccaacagcatggaagcatcacaaccctgattcagtaacacca 715  Q
    |||  ||||||||||||||||| ||||| |||| |||||||||||| ||||||||  |||||||||    
T  32309681 aaccatttctatcaccattgtcttccaatagcaaggaagcatcacatccctgatttcgtaacacca 32309616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 550 - 715
Target Start/End: Original strand, 32565056 - 32565218
Alignment:
Q  550 acaacgccgggacatgcttgttccacctcctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcatagg 649  Q
    |||| |||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32565056 acaatgccgggacatgcttgttccacctcctcct---tgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcatagg 32565152  T
Q  650 aactgtttctatcaccattgtcctccaacagcatggaagcatcacaaccctgattcagtaacacca 715  Q
    ||| |||||||||||||||||| ||||| |||| ||||||||||||||||||||| || |||||||    
T  32565153 aaccgtttctatcaccattgtcttccaatagcaaggaagcatcacaaccctgatttagaaacacca 32565218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 550 - 715
Target Start/End: Original strand, 32814679 - 32814841
Alignment:
Q  550 acaacgccgggacatgcttgttccacctcctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcatagg 649  Q
    |||||||||||||||||||| |||||||| ||||   | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32814679 acaacgccgggacatgcttgctccacctcttcct---tgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcatagg 32814775  T
Q  650 aactgtttctatcaccattgtcctccaacagcatggaagcatcacaaccctgattcagtaacacca 715  Q
    ||| |||||||||||||||||| ||||| |||| |||||||||||| ||||||||  |||||||||    
T  32814776 aaccgtttctatcaccattgtcttccaatagcaaggaagcatcacatccctgatttcgtaacacca 32814841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 550 - 704
Target Start/End: Complemental strand, 32305645 - 32305494
Alignment:
Q  550 acaacgccgggacatgcttgttccacctcctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcatagg 649  Q
    |||||||||||||||||||| |||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32305645 acaacgccgggacatgcttgatccacctcctcct---tgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcatagg 32305549  T
Q  650 aactgtttctatcaccattgtcctccaacagcatggaagcatcacaaccctgatt 704  Q
    ||| |||||||||||||| ||| ||||| |||| |||||||||||| ||||||||    
T  32305548 aaccgtttctatcaccatagtcttccaatagcaaggaagcatcacatccctgatt 32305494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 548 - 712
Target Start/End: Original strand, 28215265 - 28215417
Alignment:
Q  548 agacaacgccgggacatgcttgttccacctcctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcttgcttctcata 647  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28215265 agacaacgccgggacatgcttgttccacctc---ctccttaatcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcata 28215361  T
Q  648 ggaactgtttctatcaccattgtcctccaacagcatggaagcatcacaaccctgattcagtaaca 712  Q
    |||| ||||||||         |||||||||| || ||| |||||||||||||||||||| ||||    
T  28215362 ggaaatgtttcta---------tcctccaacaacaaggatgcatcacaaccctgattcagcaaca 28215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 398 - 499
Target Start/End: Original strand, 28215008 - 28215109
Alignment:
Q  398 cattctccctaactatctttgtattttctgtctatcaaaattattcactatacaaggtttccatcgcaatgttaacaatttaaaacgaaaagaaatttta 497  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||| |||||    
T  28215008 cattctccctaactatccttgtattttctctctatcaaaattattcactatacaagttttccatcgccatgttaacaatgtaaaatgaaaagaagtttta 28215107  T
Q  498 ga 499  Q
    ||    
T  28215108 ga 28215109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 550
Target Start/End: Original strand, 28215192 - 28215245
Alignment:
Q  497 agagaagaaatatgttaggaacaaaccaaacaaactgaatctctcgctgcaaga 550  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  28215192 agagaagaaatatgttaagaacaaaccaaaaaaacggaatctctcgctgcaaga 28215245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 28221064 - 28221011
Alignment:
Q  497 agagaagaaatatgttaggaacaaaccaaacaaactgaatctctcgctgcaaga 550  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  28221064 agagaagaaatatgttaagaacaaaccaaaaaaacggaatctctcgctgcaaga 28221011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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