View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7309_low_30 (Length: 270)
Name: NF7309_low_30
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_30 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 11170603 - 11170838
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaa |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
11170603 |
tcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaa |
11170702 |
T |
|
| Q |
117 |
cattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11170703 |
cattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
11170802 |
T |
|
| Q |
217 |
caagtcaaggccatatgcaattgcagctgcagtagg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170803 |
caagtcaaggccatatgcaattgcagctgcagtagg |
11170838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 11275992 - 11276222
Alignment:
| Q |
22 |
tttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattg |
121 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11275992 |
tttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattg |
11276091 |
T |
|
| Q |
122 |
atatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagt |
221 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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|
| T |
11276092 |
atatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgt |
11276191 |
T |
|
| Q |
222 |
caaggccatatgcaattgcagctgcagtagg |
252 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
11276192 |
taaagccatatgcaattgcagctgcagtagg |
11276222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 11209440 - 11209660
Alignment:
| Q |
32 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
11209440 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccat |
11209539 |
T |
|
| Q |
132 |
tctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata |
231 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||| |
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|
| T |
11209540 |
cctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccata |
11209639 |
T |
|
| Q |
232 |
tgcaattgcagctgcagtagg |
252 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11209640 |
tgcaattgcagctgcagtagg |
11209660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 11196756 - 11196987
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaa |
116 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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|
| T |
11196756 |
tcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaa |
11196855 |
T |
|
| Q |
117 |
cattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
216 |
Q |
| |
|
|||||||| |||| ||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
11196856 |
cattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggttt |
11196955 |
T |
|
| Q |
217 |
caagtcaaggccatatgcaattgcagctgcag |
248 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| |
|
|
| T |
11196956 |
catgtcaagaccatatgcaattgcagctgcag |
11196987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 11199921 - 11200152
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaa |
116 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
11199921 |
tcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaa |
11200020 |
T |
|
| Q |
117 |
cattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
216 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11200021 |
cattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggttt |
11200120 |
T |
|
| Q |
217 |
caagtcaaggccatatgcaattgcagctgcag |
248 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| |
|
|
| T |
11200121 |
catgtcaagaccatatgcaattgcagctgcag |
11200152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 11161170 - 11161405
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaa |
116 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
11161170 |
tcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaa |
11161269 |
T |
|
| Q |
117 |
cattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
216 |
Q |
| |
|
|||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
11161270 |
cattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggttt |
11161369 |
T |
|
| Q |
217 |
caagtcaaggccatatgcaattgcagctgcagtagg |
252 |
Q |
| |
|
|| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
11161370 |
catgtcaagaccatatgcaattgcatctgcagtagg |
11161405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 11156303 - 11156534
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaa |
116 |
Q |
| |
|
|||| ||||| ||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
11156303 |
tcgattttatacttcctcgagaactcattcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaa |
11156402 |
T |
|
| Q |
117 |
cattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
216 |
Q |
| |
|
|||||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
11156403 |
cattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggttt |
11156502 |
T |
|
| Q |
217 |
caagtcaaggccatatgcaattgcagctgcag |
248 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| |
|
|
| T |
11156503 |
catgtcaagaccatatgcaattgcagctgcag |
11156534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 11241488 - 11241346
Alignment:
| Q |
110 |
gccttaacattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaa |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||| || ||||| | ||||| ||||||||||||||||| |
|
|
| T |
11241488 |
gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaa |
11241389 |
T |
|
| Q |
210 |
atggtttcaagtcaaggccatatgcaattgcagctgcagtagg |
252 |
Q |
| |
|
| ||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
11241388 |
gagttttcatgttaaggccatatgcaattgcaactgcagtagg |
11241346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 11133032 - 11133262
Alignment:
| Q |
22 |
tttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattg |
121 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |||| ||| || |
|
|
| T |
11133032 |
tttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtg |
11133131 |
T |
|
| Q |
122 |
atatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagt |
221 |
Q |
| |
|
|| || || || ||||| |||| |||||| ||||| |||||||| ||||| ||||||| ||||||| | || |||||||||| |||||| || |
|
|
| T |
11133132 |
attccattcttatcgaatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgt |
11133231 |
T |
|
| Q |
222 |
caaggccatatgcaattgcagctgcagtagg |
252 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |
|
|
| T |
11133232 |
caagaccatatgcaattgcagctgctgtagg |
11133262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 11314848 - 11314688
Alignment:
| Q |
37 |
gaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaacattgatatcaccattctca |
136 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||||||| || |||| |||| ||||| ||||||||||| |
|
|
| T |
11314848 |
gaacacttccacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctca |
11314749 |
T |
|
| Q |
137 |
aatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctac |
197 |
Q |
| |
|
| ||| |||| |||||| ||||||||||| ||||| || || || |||||||||||||||| |
|
|
| T |
11314748 |
agtgtgagaatagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 11241557 - 11241511
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccat |
63 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
11241557 |
tcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 921 - 1153
Alignment:
| Q |
17 |
tcgagtttatgctttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctccattaatggccttaa |
116 |
Q |
| |
|
|||| ||||| ||| || |||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| ||| ||||||| |
|
|
| T |
921 |
tcgattttatacttccttaagaacactttcacaaaatggttcaccattgcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaa |
1020 |
T |
|
| Q |
117 |
cattgatatcaccattctcaaatgttagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggttt |
216 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
1021 |
cattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatg---tgatggttt |
1117 |
T |
|
| Q |
217 |
caagtcaaggccatatgcaattgcagctgcagtagg |
252 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
1118 |
tgtgtcaaagccatatgcaattgcagctgcagtagg |
1153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 12528558 - 12528622
Alignment:
| Q |
38 |
aactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcc |
102 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||| | ||| || |||||||||||||| |
|
|
| T |
12528558 |
aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctcc |
12528622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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