View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_33 (Length: 262)
Name: NF7309_low_33
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 33570408 - 33570301
Alignment:
| Q |
133 |
ggataaggcaaggtaggtggtggtagggttggctaggaaagtagcattgatgaagtacagtagtacatttttattttacatgaaccataaagttttttat |
232 |
Q |
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| T |
33570408 |
ggataaggcaaggtaggtggtggtagggttggctaggaaagtagcattgatgaagcacagtagtacatttttattttacatgaaccataaagttttttat |
33570309 |
T |
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| Q |
233 |
ttacattt |
240 |
Q |
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|||||||| |
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| T |
33570308 |
ttacattt |
33570301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 33570525 - 33570460
Alignment:
| Q |
16 |
aagaaaatactaacacaacactatatatgtacttaaaaacacttcactaccttgttgcttagaagg |
81 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33570525 |
aagaaaatactaacacaacactatatatgtacttaaaaacacttcactaccttgttgcttagaagg |
33570460 |
T |
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