View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_low_42 (Length: 238)

Name: NF7309_low_42
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_low_42
NF7309_low_42
[»] chr3 (1 HSPs)
chr3 (22-238)||(9021892-9022108)
[»] chr7 (3 HSPs)
chr7 (166-208)||(22763312-22763354)
chr7 (167-213)||(29677020-29677066)
chr7 (167-206)||(32239044-32239083)
[»] chr4 (2 HSPs)
chr4 (167-213)||(3120975-3121021)
chr4 (169-208)||(14133955-14133994)
[»] chr2 (5 HSPs)
chr2 (167-209)||(17628483-17628525)
chr2 (167-209)||(17673554-17673596)
chr2 (167-208)||(1644526-1644567)
chr2 (16-112)||(13496382-13496477)
chr2 (171-207)||(19569500-19569536)
[»] chr8 (3 HSPs)
chr8 (167-206)||(16821914-16821953)
chr8 (165-213)||(19442305-19442353)
chr8 (165-213)||(19578456-19578504)
[»] chr1 (2 HSPs)
chr1 (167-209)||(28538423-28538465)
chr1 (167-213)||(23971179-23971225)
[»] chr5 (1 HSPs)
chr5 (167-237)||(2808384-2808454)
[»] chr6 (1 HSPs)
chr6 (168-208)||(13627744-13627784)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 9022108 - 9021892
Alignment:
Q  22 aacatatcatgatctttttatattctggatagctttatattggtgacaatgagattgattgatgttaaactttagtatgattacttttatttagctaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9022108 aacatatcatgatctttttatattctggatagctttatattggtgacaatgagatggattgatgttaaactttagtatgattacttttatttagctaatt 9022009  T
Q  122 tttggtatatcaaacatagtatgatctttttacacatggctaactctttaaatttggatgccttggacgaatcaagagagtggtgcctttatnnnnnnnt 221  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |    
T  9022008 tttggtatatcaaatatagtatgatctttttacacagggctaactctttaaatttggatgccttggacgaatcaagagagtggtgcccttataaaaaaat 9021909  T
Q  222 tccacaaaaaatgatac 238  Q
    |||||||||||||||||    
T  9021908 tccacaaaaaatgatac 9021892  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 22763312 - 22763354
Alignment:
Q  166 tctttaaatttggatgccttggacgaatcaagagagtggtgcc 208  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  22763312 tctttaaatttggataccttggacgaatcaagagagtggtgcc 22763354  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 29677066 - 29677020
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcctttat 213  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||    
T  29677066 ctttaaatttggatgccttggaaaaatcaaaagagtggtgcctttat 29677020  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 32239083 - 32239044
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtg 206  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  32239083 ctttaaatttagatgccttgaacgaatcaagagagtggtg 32239044  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 3120975 - 3121021
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcctttat 213  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  3120975 ctttaaatttggatgccttgggcgaatcaagagagtggtgcccttat 3121021  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 14133955 - 14133994
Alignment:
Q  169 ttaaatttggatgccttggacgaatcaagagagtggtgcc 208  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  14133955 ttaaatttgaatgccttgggcgaatcaagagagtggtgcc 14133994  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 17628525 - 17628483
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcct 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  17628525 ctttaaatttggatgccttgggcgaatcaagagagtggtgcct 17628483  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 17673596 - 17673554
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcct 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  17673596 ctttaaatttggatgccttgggcgaatcaagagagtggtgcct 17673554  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 1644526 - 1644567
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcc 208  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  1644526 ctttaaatttagatgccttgggcgaatcaagagagtggtgcc 1644567  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 13496477 - 13496382
Alignment:
Q  16 agatcaaacatatcatgatctttttatattctggatagctttatattggtgacaatgagattgattgatgttaaactttagtatgattacttttatt 112  Q
    ||||||||||||||||| |||||| ||||| | || | |||||| ||||| || || || | |||||||| ||||||||||| || |||| ||||||    
T  13496477 agatcaaacatatcatggtctttt-atattttagacaactttatgttggtaactattaggtggattgatgataaactttagtttggttacctttatt 13496382  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 19569500 - 19569536
Alignment:
Q  171 aaatttggatgccttggacgaatcaagagagtggtgc 207  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  19569500 aaatttggatgccttggacgaataaagaaagtggtgc 19569536  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 16821914 - 16821953
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtg 206  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  16821914 ctttaaatttggatgtcttggacgaatcaagagagtggtg 16821953  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 19442305 - 19442353
Alignment:
Q  165 ctctttaaatttggatgccttggacgaatcaagagagtggtgcctttat 213  Q
    ||||| |||||| ||||| |||| |||||||||||||||||| ||||||    
T  19442305 ctcttgaaatttagatgctttgggcgaatcaagagagtggtgtctttat 19442353  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 19578456 - 19578504
Alignment:
Q  165 ctctttaaatttggatgccttggacgaatcaagagagtggtgcctttat 213  Q
    ||||| |||||| ||||| |||| |||||||||||||||||| ||||||    
T  19578456 ctcttgaaatttagatgctttgggcgaatcaagagagtggtgtctttat 19578504  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 28538423 - 28538465
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcct 209  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  28538423 ctttaaatttggatgccttggacgaatcaggtgagtggtgcct 28538465  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 23971225 - 23971179
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcctttat 213  Q
    |||||||||||||||||||||   |||||||||||||||||| ||||    
T  23971225 ctttaaatttggatgccttgggaaaatcaagagagtggtgcccttat 23971179  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 2808384 - 2808454
Alignment:
Q  167 ctttaaatttggatgccttggacgaatcaagagagtggtgcctttatnnnnnnnttccacaaaaaatgata 237  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| ||||       |||||||||||||||||    
T  2808384 ctttaaatttgaatgtcttgggcgaatcaagagagtggtgcccttataaaaaaattccacaaaaaatgata 2808454  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 13627744 - 13627784
Alignment:
Q  168 tttaaatttggatgccttggacgaatcaagagagtggtgcc 208  Q
    ||||||||| ||||||||||||||||||| |||||| ||||    
T  13627744 tttaaatttagatgccttggacgaatcaaaagagtgatgcc 13627784  T

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