View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_low_45 (Length: 233)

Name: NF7309_low_45
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_low_45
NF7309_low_45
[»] chr1 (6 HSPs)
chr1 (106-218)||(47457746-47457858)
chr1 (65-109)||(47458982-47459026)
chr1 (68-107)||(37028789-37028828)
chr1 (76-109)||(43824218-43824251)
chr1 (65-101)||(19563578-19563614)
chr1 (76-108)||(36384395-36384427)
[»] chr2 (3 HSPs)
chr2 (65-108)||(18058989-18059032)
chr2 (65-107)||(39822764-39822806)
chr2 (75-108)||(39822972-39823005)
[»] chr4 (1 HSPs)
chr4 (65-108)||(31799143-31799186)
[»] chr3 (4 HSPs)
chr3 (66-108)||(35637085-35637127)
chr3 (65-107)||(3984657-3984699)
chr3 (69-97)||(2663453-2663481)
chr3 (76-108)||(28212625-28212657)
[»] chr8 (4 HSPs)
chr8 (65-108)||(29525734-29525777)
chr8 (65-108)||(35163218-35163261)
chr8 (65-102)||(27768765-27768802)
chr8 (67-108)||(30233670-30233711)
[»] chr5 (4 HSPs)
chr5 (65-108)||(24147272-24147315)
chr5 (65-108)||(29668384-29668427)
chr5 (65-108)||(38088856-38088899)
chr5 (65-108)||(43146212-43146255)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 47457858 - 47457746
Alignment:
Q  106 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457858 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 47457759  T
Q  206 tcacaccaccttc 218  Q
    |||||||||||||    
T  47457758 tcacaccaccttc 47457746  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 47459026 - 47458982
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47459026 gaggtgttagattttaattggttgggtgtaagaatgatgtgttga 47458982  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 37028789 - 37028828
Alignment:
Q  68 gtgttagattttaattggttgggtgtaagaatgatgtgtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37028789 gtgttagattttaattggttgggtgtaagaatgatgtgtt 37028828  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 43824251 - 43824218
Alignment:
Q  76 ttttaattggttgggtgtaagaatgatgtgttga 109  Q
    |||| |||||||||||||||||||||||||||||    
T  43824251 tttttattggttgggtgtaagaatgatgtgttga 43824218  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 19563578 - 19563614
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatga 101  Q
    |||||||| |||||||||||||||| |||||||||||    
T  19563578 gaggtgtttgattttaattggttggatgtaagaatga 19563614  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 36384395 - 36384427
Alignment:
Q  76 ttttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||| ||||||||||||||||||||||||||||    
T  36384395 tttttattggttgggtgtaagaatgatgtgttg 36384427  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 18058989 - 18059032
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  18058989 gaggtgtttgattttaattggttgggtgtaagaatgatgtgttg 18059032  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 39822806 - 39822764
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgtt 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  39822806 gaggtgtttgattttaattggttgggtgtaagaatgatgtgtt 39822764  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 39822972 - 39823005
Alignment:
Q  75 attttaattggttgggtgtaagaatgatgtgttg 108  Q
    ||||| ||||||||||||||||||||||||||||    
T  39822972 atttttattggttgggtgtaagaatgatgtgttg 39823005  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 31799186 - 31799143
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  31799186 gaggtgttagattttaattggttgggtgtaagaattatatgttg 31799143  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 35637127 - 35637085
Alignment:
Q  66 aggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  35637127 aggtgtttgattttaattggttgggtgtaaaaatgatgtgttg 35637085  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 3984657 - 3984699
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgtt 107  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  3984657 gaggtgtttgattttaattggttggatttaagaatgatgtgtt 3984699  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 2663453 - 2663481
Alignment:
Q  69 tgttagattttaattggttgggtgtaaga 97  Q
    |||||||||||||||||||||||||||||    
T  2663453 tgttagattttaattggttgggtgtaaga 2663481  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 28212657 - 28212625
Alignment:
Q  76 ttttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||| ||||||||||||||||||||||||||||    
T  28212657 tttttattggttgggtgtaagaatgatgtgttg 28212625  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 29525777 - 29525734
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| |||||||||| |||||||||||||||| |||||||    
T  29525777 gaggtgtttgattttaattagttgggtgtaagaatgttgtgttg 29525734  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 35163218 - 35163261
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||    
T  35163218 gaggtgtttgattttaattgattggatgtaagaatgatgtgttg 35163261  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 27768802 - 27768765
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgat 102  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  27768802 gaggtgtttgattttaattggttggatgtaagaatgat 27768765  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 30233711 - 30233670
Alignment:
Q  67 ggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  30233711 ggtgtcagattttaattggttaggtgtaagaaagatgtgttg 30233670  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 24147272 - 24147315
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| |||||||||||||||||||||||||  ||||||||    
T  24147272 gaggtgtttgattttaattggttgggtgtaagaaatatgtgttg 24147315  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 29668427 - 29668384
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| |||||||||| |||| |||||||||||||||||||    
T  29668427 gaggtgtttgattttaattagttgagtgtaagaatgatgtgttg 29668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 38088899 - 38088856
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||    
T  38088899 gaggtgtttgatttcaattggttgggggtaagaatgatgtgttg 38088856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 43146255 - 43146212
Alignment:
Q  65 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 108  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  43146255 gaggtgtttgattttaattgattgggtgtaagaatgatttgttg 43146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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