View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_low_46 (Length: 222)

Name: NF7309_low_46
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_low_46
NF7309_low_46
[»] scaffold0284 (1 HSPs)
scaffold0284 (16-207)||(2254-2445)
[»] chr4 (7 HSPs)
chr4 (14-219)||(6553013-6553219)
chr4 (14-219)||(6552613-6552819)
chr4 (14-219)||(312787-313003)
chr4 (17-84)||(38932846-38932914)
chr4 (112-178)||(24181727-24181793)
chr4 (20-82)||(48828123-48828185)
chr4 (89-141)||(6561023-6561075)
[»] chr8 (3 HSPs)
chr8 (14-194)||(41528440-41528620)
chr8 (14-207)||(36754454-36754647)
chr8 (112-170)||(43216917-43216975)
[»] scaffold0114 (1 HSPs)
scaffold0114 (14-219)||(35117-35323)
[»] chr1 (7 HSPs)
chr1 (14-219)||(45919624-45919830)
chr1 (14-219)||(49880255-49880463)
chr1 (21-90)||(40872549-40872618)
chr1 (98-178)||(16853665-16853745)
chr1 (89-170)||(31088746-31088829)
chr1 (17-58)||(9890556-9890597)
chr1 (23-55)||(51849590-51849622)
[»] chr2 (7 HSPs)
chr2 (14-207)||(31967255-31967448)
chr2 (17-82)||(23077824-23077889)
chr2 (15-87)||(9470617-9470689)
chr2 (14-82)||(41746338-41746406)
chr2 (91-130)||(36727631-36727670)
chr2 (104-144)||(36720129-36720169)
chr2 (94-178)||(45054025-45054109)
[»] chr5 (2 HSPs)
chr5 (14-205)||(9023444-9023635)
chr5 (19-55)||(27769810-27769846)
[»] scaffold0211 (1 HSPs)
scaffold0211 (14-219)||(19858-20064)
[»] chr3 (6 HSPs)
chr3 (37-204)||(50239968-50240138)
chr3 (14-88)||(7672541-7672615)
chr3 (9-75)||(43838652-43838718)
chr3 (14-55)||(30006165-30006206)
chr3 (112-179)||(14249223-14249290)
chr3 (112-178)||(6437626-6437692)
[»] chr6 (6 HSPs)
chr6 (17-90)||(6525049-6525122)
chr6 (14-80)||(21237365-21237431)
chr6 (23-54)||(12291667-12291698)
chr6 (99-178)||(18089942-18090021)
chr6 (97-178)||(26595897-26595978)
chr6 (89-177)||(31737166-31737254)
[»] scaffold0191 (1 HSPs)
scaffold0191 (112-178)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (89-141)||(29157-29209)
[»] scaffold0074 (1 HSPs)
scaffold0074 (91-178)||(32751-32837)
[»] chr7 (4 HSPs)
chr7 (27-89)||(5198098-5198160)
chr7 (18-82)||(30839724-30839788)
chr7 (91-145)||(2929478-2929532)
chr7 (112-178)||(6190585-6190651)
[»] scaffold0252 (1 HSPs)
scaffold0252 (17-82)||(17102-17166)


Alignment Details
Target: scaffold0284 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 2445 - 2254
Alignment:
Q  16 gagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac 115  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445 gagacaatttaaaattttaatagattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac 2346  T
Q  116 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2345 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 6553013 - 6553219
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  6553013 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaagaa 6553112  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 212  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||||     
T  6553113 acatataagtgagatgatcgatatacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatgatccaa 6553212  T
Q  213 ctcattg 219  Q
    |||||||    
T  6553213 ctcattg 6553219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 6552613 - 6552819
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  6552613 cagagacaatttaaatctttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaaaa 6552712  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||     
T  6552713 acgtataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 6552812  T
Q  213 ctcattg 219  Q
    |||||||    
T  6552813 ctcattg 6552819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 312787 - 313003
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccc----------tggatgcaaaagtaa 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |          |||||||||||||||    
T  312787 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagtaa 312886  T
Q  104 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  312887 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgt 312986  T
Q  204 gatg-tccatctcattg 219  Q
    |||| |||| |||||||    
T  312987 gatgatccaactcattg 313003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 38932846 - 38932914
Alignment:
Q  17 agacaatttaaaattttaataca-ttgagggactattttagcctcacatgcatccaatgtctagatctg 84  Q
    ||||||||||||||||| ||||| ||||| |||||||||| || || ||||||| |||||||| |||||    
T  38932846 agacaatttaaaattttgatacatttgagagactattttaaccccatatgcatcaaatgtctaaatctg 38932914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 24181793 - 24181727
Alignment:
Q  112 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||| ||||||| || |||||||    
T  24181793 aaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaat 24181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 48828123 - 48828185
Alignment:
Q  20 caatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 82  Q
    ||||| |||||||  |||||||||||| ||||||||||| |||||  ||| ||||||||||||    
T  48828123 caattgaaaatttcgatacattgagggtctattttagccccacatatatcaaatgtctagatc 48828185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  89 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 141  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 41528620 - 41528440
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  41528620 cagagacaatttaaaattttaatacattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaagaa 41528521  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaacctta 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528520 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaacctta 41528440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 36754647 - 36754454
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36754647 cagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaagaa 36754548  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  |||||||||||    
T  36754547 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg 36754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
Q  112 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 170  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| ||||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg 43216917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 35117 - 35323
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  35117 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 35216  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| |||||| ||||     
T  35217 acatataagttagatgatcgatatacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataaagtgatgatccaa 35316  T
Q  213 ctcattg 219  Q
    |||||||    
T  35317 ctcattg 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 45919830 - 45919624
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  45919830 cagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 45919731  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||     
T  45919730 atatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 45919631  T
Q  213 ctcattg 219  Q
    |||||||    
T  45919630 ctcattg 45919624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 49880255 - 49880463
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    ||||||||||||||||||| |||||||||  |||||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  49880255 cagagacaatttaaaatttaaatacattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 49880354  T
Q  114 acatataagtgagatgat--cgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tcc 210  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  ||||||||||| |||    
T  49880355 acatataagtgagatgataaagatatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatcc 49880454  T
Q  211 atctcattg 219  Q
    | |||||||    
T  49880455 aactcattg 49880463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 40872618 - 40872549
Alignment:
Q  21 aatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctg 90  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  ||| |||||||| || ||||||||    
T  40872618 aatttaaaattttgatacattaagggactattttagcctcacatatatcaaatgtctaaatttgtccctg 40872549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 16853665 - 16853745
Alignment:
Q  98 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||| |||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaat 16853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
Q  89 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 170  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| ||||||||||||| ||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg 31088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 9890597 - 9890556
Alignment:
Q  17 agacaatttaaaattttaatacattgagggactattttagcc 58  Q
    |||||||||||||||||||||||||||  ||| |||||||||    
T  9890597 agacaatttaaaattttaatacattgaaagaccattttagcc 9890556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 51849590 - 51849622
Alignment:
Q  23 tttaaaattttaatacattgagggactatttta 55  Q
    ||||||||||||||||||| |||||||||||||    
T  51849590 tttaaaattttaatacattcagggactatttta 51849622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 31967448 - 31967255
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    ||||||||| ||||| |||| ||| ||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31967448 cagagacaacttaaattttttataaattgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 31967349  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  31967348 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 31967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 23077889 - 23077824
Alignment:
Q  17 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 82  Q
    |||||| |||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||    
T  23077889 agacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagatc 23077824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 9470689 - 9470617
Alignment:
Q  15 agagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtcc 87  Q
    ||||||||||||||||||| ||| ||| || |||||||||| || |||||| ||| |||||||||||| ||||    
T  9470689 agagacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagatccgtcc 9470617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 41746406 - 41746338
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 82  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||||| |||||  ||| ||||||||||||    
T  41746406 cagagacaatttaaaattttgatatattaagggtctattttagccccacatatatcaaatgtctagatc 41746338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  91 gatgcaaaagtaaatgttaagaaacatataagtgagatga 130  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  104 atgttaagaaacatataagtgagatgatcgatatacctaat 144  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 45054109 - 45054025
Alignment:
Q  94 gcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    |||||||||||| || || ||||||||||||||||  || |||||||| ||    |||||||||| |||| |||||| |||||||    
T  45054109 gcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaat 45054025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 9023444 - 9023635
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||    
T  9023444 cagagacaatttaaaattttaatacattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaagaa 9023543  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtga 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  9023544 acatacaagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtga 9023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 27769846 - 27769810
Alignment:
Q  19 acaatttaaaattttaatacattgagggactatttta 55  Q
    |||||||||| |||| |||||||||||||||||||||    
T  27769846 acaatttaaattttttatacattgagggactatttta 27769810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 20064 - 19858
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaa 113  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  20064 cagagacaatttaaaattttaatacattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaagaa 19965  T
Q  114 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtgatg-tccat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||  ||||||||||| ||||     
T  19964 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatgatccaa 19865  T
Q  213 ctcattg 219  Q
    |||||||    
T  19864 ctcattg 19858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 50239968 - 50240138
Alignment:
Q  37 acattgagggactattttagcctcacatgcatccaatgtctagatctgtccctggatgcaaaagtaaatgttaa---gaaacatataagtgagatgatcg 133  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||    
T  50239968 acattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcg 50240067  T
Q  134 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttagtataatgtg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  50240068 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtg 50240138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 7672541 - 7672615
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccc 88  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||  ||||| ||| ||| |||||||| |||||    
T  7672541 cagagacaatttaaaattttaatacattgatgaactattttaaccatacatgtatcaaatatctagatccgtccc 7672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 43838652 - 43838718
Alignment:
Q  9 agaagcagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgt 75  Q
    |||| |||||||||| ||||||||| ||||||||||| |||||||||||| |||||| ||| |||||    
T  43838652 agaatcagagacaatgtaaaattttgatacattgaggaactattttagccccacatgtatcaaatgt 43838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 30006206 - 30006165
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactatttta 55  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  30006206 cagagataatttaaaattttaatacattgtgggactatttta 30006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
Q  112 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaatt 179  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||| | ||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt 14249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 6437626 - 6437692
Alignment:
Q  112 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||  |||||||||| |||||||    
T  6437626 aaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaat 6437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 6525049 - 6525122
Alignment:
Q  17 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccctg 90  Q
    ||||||||||||||||| ||||||||| |||||||||||| | |||||| ||| |||||||||||||| |||||    
T  6525049 agacaatttaaaattttgatacattgatggactattttagtcccacatgtatcaaatgtctagatctgcccctg 6525122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 21237365 - 21237431
Alignment:
Q  14 cagagacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctaga 80  Q
    |||||||||||||||||||| |||||||  |||||||||||| || |||||| ||  ||||||||||    
T  21237365 cagagacaatttaaaattttgatacattatgggactattttaaccccacatgtatgaaatgtctaga 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 12291667 - 12291698
Alignment:
Q  23 tttaaaattttaatacattgagggactatttt 54  Q
    ||||||||||||||||||||||||||||||||    
T  12291667 tttaaaattttaatacattgagggactatttt 12291698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 18090021 - 18089942
Alignment:
Q  99 agtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    |||| ||||| |||||||||||| |||||||| | ||||||||||| |  |||| |||||| ||| |||||| |||||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaat 18089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 26595978 - 26595897
Alignment:
Q  97 aaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    |||||| ||||| |||||||||||||| |||||| | ||  |||||||    |||| ||||||||||||||||| |||||||    
T  26595978 aaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaat 26595897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 31737254 - 31737166
Alignment:
Q  89 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaa 177  Q
    ||||||||| |||| ||||| |  |||||| |||||| |||||  |||||||||||||| |||||||| |  ||| |||||| ||||||    
T  31737254 tggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatgtggtgtcaa 31737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 11645 - 11711
Alignment:
Q  112 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||| |||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaat 11711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  89 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 141  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 32751 - 32837
Alignment:
Q  91 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    ||||||| || | |||||||||||||||||||||||||||  ||||||||| || |  ||| ||||| |||||||||||| |||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtggtgtcaat 32837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 5198098 - 5198160
Alignment:
Q  27 aaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatctgtccct 89  Q
    ||||||| |||||||||| ||||||||||||  || ||||||| |||||||||||||| ||||    
T  5198098 aaattttgatacattgagagactattttagctccatatgcatcaaatgtctagatctgcccct 5198160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 30839788 - 30839724
Alignment:
Q  18 gacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 82  Q
    ||||||| |||||| | ||||||| |||||||||||||||| || ||| ||| ||||||||||||    
T  30839788 gacaattaaaaattctgatacattaagggactattttagccccaaatgtatcaaatgtctagatc 30839724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  91 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 145  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 6190585 - 6190651
Alignment:
Q  112 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaat 178  Q
    ||||||||||||| ||| ||| |||||| |||| |  ||||||||||| |||||||||| |||||||    
T  6190585 aaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaat 6190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 17166 - 17102
Alignment:
Q  17 agacaatttaaaattttaatacattgagggactattttagcctcacatgcatccaatgtctagatc 82  Q
    ||||||||||||||||| |||||||||  ||||||||| ||| |||||| ||| ||||||||||||    
T  17166 agacaatttaaaattttgatacattgaaagactatttt-gccccacatgtatcaaatgtctagatc 17102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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