View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7309_low_50 (Length: 209)

Name: NF7309_low_50
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7309_low_50
NF7309_low_50
[»] chr6 (27 HSPs)
chr6 (18-186)||(28185972-28186140)
chr6 (18-186)||(28235144-28235312)
chr6 (18-186)||(28297175-28297343)
chr6 (18-186)||(28514730-28514898)
chr6 (18-186)||(28181696-28181864)
chr6 (18-186)||(28243374-28243542)
chr6 (18-186)||(28326057-28326225)
chr6 (18-183)||(28227531-28227696)
chr6 (18-105)||(26623850-26623937)
chr6 (18-105)||(26729827-26729914)
chr6 (120-186)||(28503795-28503861)
chr6 (29-109)||(31288895-31288975)
chr6 (18-105)||(26656544-26656631)
chr6 (18-105)||(26762515-26762602)
chr6 (18-105)||(29826562-29826649)
chr6 (56-109)||(26959743-26959796)
chr6 (29-105)||(26849302-26849378)
chr6 (41-105)||(31285161-31285225)
chr6 (18-105)||(25539122-25539209)
chr6 (18-105)||(26803025-26803112)
chr6 (18-105)||(27698102-27698189)
chr6 (18-105)||(28097959-28098046)
chr6 (19-76)||(25511518-25511575)
chr6 (18-75)||(26647058-26647115)
chr6 (18-75)||(26753026-26753083)
chr6 (56-104)||(26893105-26893153)
chr6 (58-158)||(28150495-28150595)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-183)||(57732-57897)
[»] scaffold0038 (4 HSPs)
scaffold0038 (18-186)||(35306-35474)
scaffold0038 (18-186)||(43536-43704)
scaffold0038 (18-183)||(28029-28194)
scaffold0038 (18-116)||(117372-117470)
[»] chr4 (3 HSPs)
chr4 (18-186)||(5090388-5090556)
chr4 (18-73)||(18731048-18731103)
chr4 (18-73)||(18655021-18655076)
[»] chr2 (1 HSPs)
chr2 (41-186)||(3280261-3280406)
[»] chr1 (2 HSPs)
chr1 (18-105)||(267856-267943)
chr1 (59-115)||(26136508-26136564)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 28185972 - 28186140
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  28185972 atgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgatttccctgttggtatcgagtctag 28186071  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    ||| ||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||    
T  28186072 ggttctaaaagtaaattcacttatggattttggatctaatggtgaagttcagatgctagggatctatgg 28186140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 28235144 - 28235312
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||||| ||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||    
T  28235144 atgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccctgttggtctcaagtctag 28235243  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    |||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  28235244 ggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttcagatgctagggatctatgg 28235312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 28297343 - 28297175
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  28297343 atgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttgccgattaccccgttggtctccagtctag 28297244  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||| |||||||||||||||||||||||    
T  28297243 ggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcagatgctagggatctatgg 28297175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 28514730 - 28514898
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  28514730 atgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttgccgattaccccgttggtctccagtctag 28514829  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||| |||||||||||||||||||||||    
T  28514830 ggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcagatgctagggatctatgg 28514898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 28181696 - 28181864
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    ||||||| |||||||| || |||||||||||||| || ||||| ||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||    
T  28181696 atgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagatcaattgtgttcctttatatgttgccgattactatgttggtctcgagtctag 28181795  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||    
T  28181796 ggtcctaaaagtaaattcatttctggatgtcggatctaatggtgaagttcagatgctagggatctatgg 28181864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 28243374 - 28243542
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28243374 atgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttgctgattaccctgttggtctcgagtctag 28243473  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    ||||||||||||||||  |||| | ||||| ||||||| |||||  ||||| |||||||||||||||||    
T  28243474 ggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgctagggatctatgg 28243542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 28326057 - 28326225
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||||||||||||||||||||||||||||||| |||| ||  ||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  28326057 atgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttgcggattaccctgtaggtctcgagtctag 28326156  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    | ||||| ||||||||||| || | |||||||||||||||||| | |||||||||||||||||||||||    
T  28326157 gatcctagaagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgg 28326225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 28227531 - 28227696
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||| ||||||| ||||||||||||||| | || |||||    
T  28227531 atgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccgattaccctgttggtgttgaatctag 28227630  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatcta 183  Q
    ||||||||||||||||||| || |||||||||||||||||||||| |  |||||| ||||||||||    
T  28227631 ggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacagatgatagggatcta 28227696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26623850 - 26623937
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    ||||||| || |||||||| ||||||||||||||  | |||||||||||||||||||| || ||| |||||||| | |||||||||||    
T  26623850 atgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg 26623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26729827 - 26729914
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    ||||||| || |||||||| ||||||||||||||  | |||||||||||||||||||| || ||| |||||||| | |||||||||||    
T  26729827 atgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg 26729914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 28503795 - 28503861
Alignment:
Q  120 tcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    ||||| ||||||||||| || | |||||||||||||||||| | |||||||||||||||||||||||    
T  28503795 tcctagaagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgg 28503861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 31288895 - 31288975
Alignment:
Q  29 tttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctc 109  Q
    |||||||| || ||||| | | |||| ||||||||||| || | |||||||||| ||||||||||||||| ||||||||||    
T  31288895 tttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctc 31288975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26656544 - 26656631
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||| ||||||||||||| ||||||||| |  | ||| |||||||||||||||||  |||| |||||||  | |||||||||||    
T  26656544 atgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgtttttttacatgttgccaaataccctgttgg 26656631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26762515 - 26762602
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||| ||||||||||||| ||||||||| |  | ||| |||||||||||||||||  |||| |||||||  | |||||||||||    
T  26762515 atgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgtttttttacatgttgccaaataccctgttgg 26762602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 29826562 - 29826649
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||||||||||||| ||||||||||||| | || ||||||||||   | ||||| ||| |  ||||||| ||||||||||||||    
T  29826562 atgaatacgagtttattgtgaagatagtcaaagaagtttccaacaagactgagcgtgtccctcttcatgttgcggattaccctgttgg 29826649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 26959743 - 26959796
Alignment:
Q  56 tccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctc 109  Q
    ||||||||||| || | |||||||||| ||||||||||||||| ||||||||||    
T  26959743 tccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctc 26959796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 26849302 - 26849378
Alignment:
Q  29 tttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    ||||||| ||| ||||| ||  |||| |||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  26849302 tttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttgg 26849378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 31285161 - 31285225
Alignment:
Q  41 atagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||||||  | |||||||||||||||||||| || ||| |||||||  |||||||||||||    
T  31285161 atagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgccaattaccctgttgg 31285225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 25539122 - 25539209
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||| |||||||||||||||||||| || |  | |||||||| ||||||| ||||  ||||||||| ||  | |||||||||||    
T  25539122 atgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgtttttttatatgtggccaaataccctgttgg 25539209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26803025 - 26803112
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||| |||| ||||   |||||||||||||  | ||||||||||||||||||   || ||| |||||||| |||||||||||||    
T  26803025 atgaatacaagttgattggagagatagtcaaatacatctccaacaagatcaatcgtcagcccttacatgttgctaattaccctgttgg 26803112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 27698189 - 27698102
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||| ||||||||||  |||||||||||||  | ||||||||||||| ||||   || ||| |||||||  |||||||||||||    
T  27698189 atgaatacaagtttattgaagagatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttgg 27698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 28098046 - 28097959
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||| ||||||||||  | | |||||||||||||||||||||||  | |||| ||| | |||| |||||| ||||||||| |||||    
T  28098046 atgaattcgagtttattcgggaaatagtcaaatatgtatccaacaaattgaatcatgtccttttacatgttgttgattaccccgttgg 28097959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 25511518 - 25511575
Alignment:
Q  19 tgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgtt 76  Q
    ||||||| |||||||||||||||||||| || |  | |||||||||||||||| ||||    
T  25511518 tgaatacaagtttattgagaagatagtcgaagacatctccaacaagatcaatcatgtt 25511575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 26647058 - 26647115
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgt 75  Q
    |||||||| ||||||||| |||||||||| || |  | ||||||||||||||||||||    
T  26647058 atgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgt 26647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 26753026 - 26753083
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgt 75  Q
    |||||||| ||||||||| |||||||||| || |  | ||||||||||||||||||||    
T  26753026 atgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgt 26753083  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 26893153 - 26893105
Alignment:
Q  56 tccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttg 104  Q
    |||||||||||||||| |  || |||||||||| |||||||||||||||    
T  26893153 tccaacaagatcaatccttctcttttatatgttcctgattaccctgttg 26893105  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 28150495 - 28150595
Alignment:
Q  58 caacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaat 157  Q
    ||||||||| | |||||| |||||| |||||| ||||||||||||||| ||  ||| | | |||| || |||||||||| || | | |||||||| ||||    
T  28150495 caacaagattagtcgtgtccctttacatgttgttgattaccctgttggcctgcagtgtcgagtcccaatagtaaattcacttctagctgttggatttaat 28150594  T
Q  158 g 158  Q
    |    
T  28150595 g 28150595  T

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Target: scaffold0019 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 57897 - 57732
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |||||    
T  57897 atgaatgcgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgccgattaccctgttggtatcgaatctag 57798  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatcta 183  Q
    ||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||    
T  57797 ggtcctaaaagtaaattcacttctggatgttagatctaatggtgaagttcagatgctagggatcta 57732  T

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Target: scaffold0038 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 35306 - 35474
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||||| ||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||    
T  35306 atgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccctgttggtctcaagtctag 35405  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    |||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  35406 ggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttcagatgctagggatctatgg 35474  T

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Target: scaffold0038; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 43536 - 43704
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43536 atgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttgctgattaccctgttggtctcgagtctag 43635  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    ||||||||||||||||  |||| | ||||| ||||||| |||||  ||||| |||||||||||||||||    
T  43636 ggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgctagggatctatgg 43704  T

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Target: scaffold0038; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 28029 - 28194
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||| ||||||| ||||||||||||||| | || |||||    
T  28029 atgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccgattaccctgttggtgttgaatctag 28128  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatcta 183  Q
    ||||||||||||||||||| || |||||||||||||||||||||| |  |||||| ||||||||||    
T  28129 ggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacagatgatagggatcta 28194  T

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Target: scaffold0038; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 117372 - 117470
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtcta 116  Q
    |||||||||||||||||||||||||||||||||| |||| ||  ||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||    
T  117372 atgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttgcggattaccctgtaggtctcgagtcta 117470  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 5090556 - 5090388
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctag 117  Q
    ||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||    ||||||| |||||||||||||||| |||||  | ||| || |    
T  5090556 atgaatacgagtttattcagatgatagtcacatatgtctccaacaagatcaatcacactcctttacatgttgctgattacccggttggattagagcctcg 5090457  T
Q  118 ggtcctaaaagtaaattcatttttggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
     || || ||| || ||||| |  ||||| |||| ||||||| | | || || |||||||||||||||||    
T  5090456 tgttctgaaattatattcactactggatattggttctaatgataaagtccaaatgctagggatctatgg 5090388  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 18731103 - 18731048
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 73  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  18731103 atgaatacaagtttattgaaaagatagtcaaatatgtctccaacaagatcagtcgt 18731048  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 18655076 - 18655021
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 73  Q
    |||||||| |||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  18655076 atgaatacaagtttattggaaagatagtcaaatatgtctccaacaagatcagtcgt 18655021  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 3280261 - 3280406
Alignment:
Q  41 atagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttt 140  Q
    ||||||||| |||||||||||||||| ||||||| ||||||| ||||||  |||||||| |||||  |  ||||| | ||||| |||||||||||| ||     
T  3280261 atagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttc 3280360  T
Q  141 tggatgttggatctaatggtgatgttcagatgctagggatctatgg 186  Q
    | || |||| |||||||  ||| ||  ||||| |||| ||||||||    
T  3280361 tagaagttgcatctaattatgaagtcaagatgataggtatctatgg 3280406  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 267943 - 267856
Alignment:
Q  18 atgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 105  Q
    |||||||| |||||||||   |||||||||||||  | ||||||||||||| |||||  || ||| |||||||  |||||||||||||    
T  267943 atgaatacaagtttattggagagatagtcaaatacatctccaacaagatcagtcgtgagcccttacatgttgccaattaccctgttgg 267856  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 26136508 - 26136564
Alignment:
Q  59 aacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtct 115  Q
    ||||||||||| ||||||| |||| ||||||| ||| |||| ||||| |||||||||    
T  26136508 aacaagatcaaccgtgttcttttacatgttgccgatcaccccgttgggctcgagtct 26136564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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