View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7309_low_8 (Length: 493)
Name: NF7309_low_8
Description: NF7309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7309_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33051796 - 33051601
Alignment:
| Q |
1 |
tgaagggtctagacttaatttgacaatcaatgatttaggaaatttgagccacnnnnnnnttaaagagttctttcagactcggtcatgaaggttcctagca |
100 |
Q |
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| T |
33051796 |
tgaaggttctagacttaatttgacaatcaatgatttaggaaatttgagccacaaaaaaattgaagagttctttcagactcggtcatgaaggttcctagca |
33051697 |
T |
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| Q |
101 |
tgattgaacttattaaaacagtcttaaaatgatttctgacaaagacaatgggacactgtcttttctataactggtgtgttaatctggactcgaggg |
196 |
Q |
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| T |
33051696 |
tgattgaacttattaaaacagtcttaaaatgatttctgacaaagacaatgggacactgtcttttctataagtggtgtgttaatctggactcgaggg |
33051601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 357 - 482
Target Start/End: Complemental strand, 33051379 - 33051254
Alignment:
| Q |
357 |
tacatattttccaatataatctctcctatttatatgaaatcaacataacttagaagagattaatttcaattttaattaataaagaatatggtgatatata |
456 |
Q |
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| T |
33051379 |
tacatattttataatataatctctcctatttatatgaaatcaacataacttagaagagattaatttcaattttaattaataaagaatatggtgatatata |
33051280 |
T |
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| Q |
457 |
gttacgttgttaacacttcatatatt |
482 |
Q |
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| T |
33051279 |
gttacattgttaacacttcagatatt |
33051254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 33051519 - 33051428
Alignment:
| Q |
247 |
gtaggtctagtaccctttatattctcttctaattgaaattttgctttgttttttcaaaaaatatatatgtgcaaatatattcgacttgcggt |
338 |
Q |
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| T |
33051519 |
gtaggtctagtaccctttatattctcttctaattggaattttgctttgttgtttcaaaaaatatatatgtgcaaatatattcgacttgcggt |
33051428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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