View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7310_high_2 (Length: 520)
Name: NF7310_high_2
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7310_high_2 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Complemental strand, 22928404 - 22927909
Alignment:
| Q |
11 |
aatatgaaacaatgttaaacaatgcttatagtaaatagttgtgctatagcactgcctcatagtggaatttgaacaaatcgcatttgttatgcgataacgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22928404 |
aatatgaaacaatgttaaacaatgcttatagtaaatagttgtgctatagcactgcctcatagtggaatttgaacaaattgcatttgttatgcgataacgt |
22928305 |
T |
|
| Q |
111 |
atttagtgcaaaatattttcgaataacgtctgtaacagcattatagatctgttgcattacgaaatttgaacaaagaactatgtttcgtaatctgcaattg |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
22928304 |
atttagtgcaaaatattttcaaataacgtctgtaacagcattatagctctgttgcattacgaaatttgaacaaacaactatgtttcgtaatctgcagttg |
22928205 |
T |
|
| Q |
211 |
ataaatttgcggctaacaaacacaaacaatgttagaaaaataaataaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaaga |
310 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22928204 |
ataaatttgcggccaacaaacacaaacgatgttagaaaaataaataaaacctgaatggttgaggaatattcggaaataagcgcgtattccttgcgtaaga |
22928105 |
T |
|
| Q |
311 |
aggaagagttgtagtgtagaataaatccgcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
22928104 |
aggaagagttgtagtgtagaataaatccgcccattctaacttttgattctcggatacaacaaacaattgaccaaacccctgcatatcttctggagtttgc |
22928005 |
T |
|
| Q |
411 |
cgtaatttcttcttctcttccaccggaagacttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatc |
506 |
Q |
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| T |
22928004 |
cgtaatttcttcttctcttccaccggaagacttaagaactcttgaacccctatcttcacattttccaccaataaatgatcgactccgtgattaatc |
22927909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 254 - 506
Target Start/End: Original strand, 23022750 - 23023002
Alignment:
| Q |
254 |
ataaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaaggaagagttgtagtgtagaataaatccgcccattctaacttt |
353 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| || || |||||||| || || |||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
23022750 |
ataaaacctgaatggttgaggaatatttggaaataaccgggtgttccttgcataggatggaagagtcgtagtgaagaataaatctgcccattctaacttt |
23022849 |
T |
|
| Q |
354 |
tgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagacttaagaactctt |
453 |
Q |
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|||||||| |||| |||||| | |||||||||||| | ||||| | | | |||||| ||||||||||||||||||| |||||||||| |||||||| |
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| T |
23022850 |
tgattctcagataaaacaaacagttgaccaaacccctcaatatcgttttggttttgccaaaatttcttcttctcttccaatggaagacttaggaactctt |
23022949 |
T |
|
| Q |
454 |
gaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatc |
506 |
Q |
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| T |
23022950 |
gaacacctatcttcacattttccaccaataaaggatcgactccgtgattaatc |
23023002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 505
Target Start/End: Complemental strand, 21263395 - 21263146
Alignment:
| Q |
256 |
aaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaaggaagagttgtagtgtagaataaatccgcccattctaacttttg |
355 |
Q |
| |
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|||||||||||||||| ||||| || ||||||||||| | ||||||||| || || || ||||||||| || |||||||||| ||||||||||||||||| |
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| T |
21263395 |
aaaacctgaatggttggggaatgtttggaaataagcgggaattccttgcataggatggcagagttgtaatgaagaataaatcagcccattctaacttttg |
21263296 |
T |
|
| Q |
356 |
attctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagacttaagaactcttga |
455 |
Q |
| |
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|||||| ||||||||||| | ||| ||||| || | ||||| ||||| ||||||| ||||||||||| || || || | |||| |||||||||||||| |
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| T |
21263295 |
attctcagatacaacaaacagttggccaaatccctcaatatcatctggtgtttgccaaaatttcttcttttcatctacagaaagatttaagaactcttga |
21263196 |
T |
|
| Q |
456 |
acacctatcttcacattttccaccaataaaggatcgactccgtgattaat |
505 |
Q |
| |
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||||||||||||||||||||||||||| | |||| |||||| |||||||| |
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| T |
21263195 |
acacctatcttcacattttccaccaatgagggattgactccatgattaat |
21263146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 329 - 502
Target Start/End: Complemental strand, 21211288 - 21211115
Alignment:
| Q |
329 |
gaataaatccgcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctct |
428 |
Q |
| |
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||||||||| |||||||| || || |||| ||| ||||||||||| || |||||||| |||| |||| | |||| ||||| |||| | ||||||||| |
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| T |
21211288 |
gaataaatctgcccattccaatttgtgatcctctgatacaacaaacaactgaccaaaaccttcgatatttcctggtttttgcgataatattttcttctct |
21211189 |
T |
|
| Q |
429 |
tccaccggaagacttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgatt |
502 |
Q |
| |
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|||||||| ||| | ||||| ||||||||| | | || | |||||||||||||||||||| |||||||||||| |
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| T |
21211188 |
tccaccggcagattgaagaagtcttgaacaagttttttaaaattttccaccaataaaggattgactccgtgatt |
21211115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 475
Target Start/End: Complemental strand, 21249179 - 21249043
Alignment:
| Q |
339 |
gcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaa |
438 |
Q |
| |
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||||||||||| ||||||| || || |||||||| | |||||||| |||| |||||| | ||||||||||| |||||||||||||||||||| || | |
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| T |
21249179 |
gcccattctaatttttgatcatcagagacaacaaacatctgaccaaatccttccatatcatttggagtttgccaaaatttcttcttctcttccactggta |
21249080 |
T |
|
| Q |
439 |
gacttaagaactcttgaacacctatcttcacattttc |
475 |
Q |
| |
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| |||||||| |||| || ||||||||| || ||||| |
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| T |
21249079 |
ggcttaagaattctttaatacctatctttaccttttc |
21249043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 486
Target Start/End: Original strand, 22983981 - 22984126
Alignment:
| Q |
341 |
ccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaaga |
440 |
Q |
| |
|
||||||||||||||| | || ||||||||||| || |||||||| ||||||||||| | ||| ||||||| ||||||||||||| || | ||||| |
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| T |
22983981 |
ccattctaacttttgttcatcagatacaacaaacaactgaccaaatccttgcatatcatttggtgtttgccaatatttcttcttctcatcgattggaagg |
22984080 |
T |
|
| Q |
441 |
cttaagaactcttgaacacctatcttcacattttccaccaataaag |
486 |
Q |
| |
|
| ||||| | || ||||||| |||||| ||||| |||||||||| |
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| T |
22984081 |
ttgaagaattgttcaacacctttcttcatgttttcaaccaataaag |
22984126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 22932755 - 22932668
Alignment:
| Q |
339 |
gcccattctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttct |
426 |
Q |
| |
|
|||||||||| |||||| | ||| ||||||||||| || |||||||| ||||| ||||| | ||| ||||||| ||||||||||||| |
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| T |
22932755 |
gcccattctagcttttgttcctcagatacaacaaacaactgaccaaatccttgtatatcatttggtgtttgccaaaatttcttcttct |
22932668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 21350521 - 21350452
Alignment:
| Q |
363 |
gatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttcca |
432 |
Q |
| |
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||||||||||| || ||||||||||| |||| ||| | ||| ||||||| ||||||||||||||||||| |
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| T |
21350521 |
gatacaacaaacaactgaccaaacccctgcacatcatttggtgtttgccaaaatttcttcttctcttcca |
21350452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 244 - 502
Target Start/End: Original strand, 23738 - 23996
Alignment:
| Q |
244 |
agaaaaataaataaaacctgaatggttgaggaatattcggaaataagcgagtattccttgcgtaagaaggaagagttgtagtgtagaataaatccgccca |
343 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||| || || |||||||| |||||| |||||||||| ||||| |
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| T |
23738 |
agaaaaagatataaaacctgaatggttgaggaatattcggaaataaccgaggattccttgcataggacggaagagtagtagtgaagaataaatctgccca |
23837 |
T |
|
| Q |
344 |
ttctaacttttgattctcggatacaacaaataattgaccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagactt |
443 |
Q |
| |
|
||| ||||||||||| || ||||||||||| |||||||||||||| | |||||||| |||||||||| | |||||||||||||||||||||| |||| |
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| T |
23838 |
ttccaacttttgattttccgatacaacaaacaattgaccaaacccctctatatcttccggagtttgccaaagtttcttcttctcttccaccggacgactc |
23937 |
T |
|
| Q |
444 |
aagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgatt |
502 |
Q |
| |
|
| ||| ||||||||||||||||||| ||||||||||||| ||||| |||||| ||||| |
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| T |
23938 |
atgaattcttgaacacctatcttcaaattttccaccaatgaaggactgactccatgatt |
23996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 505
Target Start/End: Original strand, 259421 - 259545
Alignment:
| Q |
381 |
ccaaacccttgcatatcttctggagtttgccgtaatttcttcttctcttccaccggaagacttaagaactcttgaacacctatcttcacattttccacca |
480 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || ||||| |||||||| | ||||| | ||||| | ||||||||| || || | |||||| |||| |
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| T |
259421 |
ccaaacccttgcatttcttcagttgtttgccaaaacttctttttctcttctattggaaggttgaagaatttttgaacaccaattttaatattttctacca |
259520 |
T |
|
| Q |
481 |
ataaaggatcgactccgtgattaat |
505 |
Q |
| |
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||||||| | |||||| |||||||| |
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| T |
259521 |
ataaagggttgactccatgattaat |
259545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 502
Target Start/End: Original strand, 26915020 - 26915102
Alignment:
| Q |
420 |
ttcttctcttccaccggaagacttaagaactcttgaacacctatcttcacattttccaccaataaaggatcgactccgtgatt |
502 |
Q |
| |
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|||||||||||||| || ||| | ||||| ||||| ||| | | || | |||||||||||||||||||| |||||||||||| |
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| T |
26915020 |
ttcttctcttccactggcagattgaagaagtcttggacaagttttttaaaattttccaccaataaaggattgactccgtgatt |
26915102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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