View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7310_low_10 (Length: 377)
Name: NF7310_low_10
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7310_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 50663288 - 50663642
Alignment:
| Q |
18 |
agaagtagaacagaaaagaagggaagaaaacaactatgtaaatcaaaggaagtttaaagaatcaaggttataca--atgacttaaaattggccaatcatc |
115 |
Q |
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| T |
50663288 |
agaagtagaacagaaaagaagggaagaaaacaactatgtaaatcaaaggaagtttaaagaatcaaggttatacacaatgacttaaaattggccaatcatc |
50663387 |
T |
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| Q |
116 |
ataatgacattatttatttcaaacatacactgtatactagaacaatgacataataaggatgaacattaacttttgtgcaatcaacttatacagaattgta |
215 |
Q |
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| T |
50663388 |
ataatgacattatttatttcaaacatacactgtatactagaacaatgacataataaggataaacattaacttttgtgcaatcaacttatacagaattgta |
50663487 |
T |
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| Q |
216 |
aaagtttctcaacctaccaccttcgagtgtttgtttagggagatcatagatttttcaaatgttcaagcaactccttttatttttccctattatccaattt |
315 |
Q |
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| T |
50663488 |
aaagtttctcaacctaccaccttcgagtgtttgttcagggagatcatagatttttcaaatgttcaagcaactccttttgtttttccctattatccacttt |
50663587 |
T |
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| Q |
316 |
cggataacatagatataataa--tcactctctactgcaaatctttgaagtataat |
368 |
Q |
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| T |
50663588 |
cggataacatagatataataatctcactctctactgcaaatctttgaagtataat |
50663642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 50653831 - 50653901
Alignment:
| Q |
94 |
gacttaaaattggccaatcatcataatgacattatttatttcaaacatacactgtatactagaacaatgacata |
167 |
Q |
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| T |
50653831 |
gacttaaaagtggcccatcatcataatga---tatttatttcaaacacacaatgtatactagaacaatgacata |
50653901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 50654001 - 50654052
Alignment:
| Q |
196 |
tcaacttatacagaattgtaaaagtttctcaacctaccaccttcgagtgttt |
247 |
Q |
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| T |
50654001 |
tcaacttctacggaattgtaaaactttctcaacctaccaccttaaagtgttt |
50654052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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