View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7310_low_11 (Length: 348)
Name: NF7310_low_11
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7310_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 10142079 - 10141735
Alignment:
| Q |
1 |
gcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatgggctagagtaa |
100 |
Q |
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| T |
10142079 |
gcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatgggctagagtaa |
10141980 |
T |
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| Q |
101 |
gcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgtgatttgtaaat |
200 |
Q |
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| T |
10141979 |
gcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgtgatttgtaaat |
10141880 |
T |
|
| Q |
201 |
gaaacaaaacaaatgtatgaataagaataaag--ttgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaatgcttgtaaga |
298 |
Q |
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| T |
10141879 |
gacacaaaacaaatgtatgaataagaataaagctgtgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaatgcttgtaaga |
10141780 |
T |
|
| Q |
299 |
tgttacttgtattccatcttccctatcatttgatgtccatctcat |
343 |
Q |
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| T |
10141779 |
tgttacttgtattccatcttccctatcatatcatgtccatctcat |
10141735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 10135288 - 10135316
Alignment:
| Q |
234 |
tgtgtcaaacttggacagtacttgaactt |
262 |
Q |
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| T |
10135288 |
tgtgtcaaacttggacagtacttgaactt |
10135316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 40685042 - 40685101
Alignment:
| Q |
82 |
cgaggatgggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaa |
141 |
Q |
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| T |
40685042 |
cgaggatgggctaaaactagcttcttctttggtaacttgttggaaaggttcttggcttaa |
40685101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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