View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7310_low_12 (Length: 327)
Name: NF7310_low_12
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7310_low_12 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 7247089 - 7247385
Alignment:
| Q |
19 |
ttaagaggggttggagattattgtactgtgcatggatggataatagttaatgaatatgaaaattgtgttctgccacctcttcactaatttttgctatgtg |
118 |
Q |
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| T |
7247089 |
ttaagaggggttggagattattgtactgtgcatggatggataatagttaatgaatatgaaaattgtgttctgccacctcttcactaatttttgctatgtg |
7247188 |
T |
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| Q |
119 |
gtggatgggtgagatagtgagtctgaacttataatgactgaacctgtgatgcttctgnnnnnnnctctgcacctgcctttgttgttgctgctgctgccct |
218 |
Q |
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| T |
7247189 |
gtggatgggtgagatagtgagtctgaacttataatgactgaacctgtgatgcttctgtttttttctctgcacctgcctttgttgttgctgctgctgccct |
7247288 |
T |
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| Q |
219 |
tgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttggttttgatgtc |
315 |
Q |
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| T |
7247289 |
tgtctctgacatcttttacacaaattcataaactaatgtacaaagaaaaaattaaatgcaaatgcatgttagtccatgcacctttggttttgctgtc |
7247385 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
210 |
tgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
305 |
Q |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
210 |
tgctgcccttgtctctgacatctttt-acagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
305 |
Q |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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