View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7310_low_17 (Length: 245)
Name: NF7310_low_17
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7310_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30020031 - 30019809
Alignment:
| Q |
1 |
gatattgcatacgaaagaataattttgttaagtttgaaattgagggtgtaatatatatgcaacatatatagaagaaaaccaaatgatgatttcacacaca |
100 |
Q |
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| T |
30020031 |
gataatgcatacgaaagaataattttgttaagtttgaaattgagggtgcaatatatatgcaacata----gaagaaaaccaaatgatgatttcacacaca |
30019936 |
T |
|
| Q |
101 |
aacatgcattttatacctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatccaaaatatcatcaacacttctt |
200 |
Q |
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| T |
30019935 |
aacatgcattttatacctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatccaaaatatcatcaacacttctt |
30019836 |
T |
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| Q |
201 |
gtctgaaatgcaaaccttggcactttt |
227 |
Q |
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| T |
30019835 |
gtctgaaatgcaaaccttggcactttt |
30019809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 9606942 - 9606879
Alignment:
| Q |
115 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
178 |
Q |
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|||||||| | ||| |||| || ||||||||||| |||||||||||||| | |||||||||||| |
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| T |
9606942 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9606879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 9834513 - 9834450
Alignment:
| Q |
115 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
178 |
Q |
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|||||||| | ||| |||| || ||||||||||| |||||||||||||| | |||||||||||| |
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| T |
9834513 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9834450 |
T |
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