View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7310_low_2 (Length: 846)
Name: NF7310_low_2
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7310_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 385 - 838
Target Start/End: Complemental strand, 42236733 - 42236280
Alignment:
| Q |
385 |
agaaactgtgtttgaagtggtagtgctggtaatggtgaagaggctaatgtaaccaaaccttgttgctgatgttgttgtagtggagtggggttgtttcttt |
484 |
Q |
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| T |
42236733 |
agaaactgtgtttgaagtggtagtgctggtaatggtgaagaggctaatgtaaccaaaccttgttgctgatgttgttgtagtggagtggggttgtttcttt |
42236634 |
T |
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| Q |
485 |
gtgattgttttctttgaagaacttcacttatagcttgataaacttcaaaaaccatattagaaggaagattttgttctttacgttgttgtttgttgagaat |
584 |
Q |
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| T |
42236633 |
gtgattgtttcctttgaagaacttcacttatagcttgataaacttcaaaaaccatattagaaggaagattttgttctttacgttgttgtttgttgagaat |
42236534 |
T |
|
| Q |
585 |
ccaataagaaggaaaatgatctttgttgctattgttgttgggtggtgatgattctgatttggattcataatcacgaacttttttgtaatcacgaagtaag |
684 |
Q |
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| T |
42236533 |
ccaataagaaggaaaatgatctttgttgctattgttgttgggtggtgatgattctgatttggattcataatcacgaacttttttgtaatcacgaagtaag |
42236434 |
T |
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| Q |
685 |
ttatcccatttatcattacattgattctggcttctcaaacaaccatggctccaacaatagttttccacccatttccatctcagttcaccactgctcttgc |
784 |
Q |
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| T |
42236433 |
ttatcccatttatcattacattgattctggcttctcaaacaaccatggctccaacaatagttttccacccatttccatctcagttcaccactgctcctgc |
42236334 |
T |
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| Q |
785 |
tggtactggtgctagggcttgcaatggaggtgacatgtgtagtgtttgatgtcc |
838 |
Q |
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| T |
42236333 |
tggtactggtgctagggcttgcaatggaggtgacatgtgtagtgtttggtgtcc |
42236280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 42237178 - 42236970
Alignment:
| Q |
48 |
gatgaaaatgggtcccattaagtgtgacagaagttgcagaccctgcaagtttgaccgataataacccacacacaacacagcatccaaaaactgttaataa |
147 |
Q |
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| T |
42237178 |
gatgaaaatgggtcccattaagtgtgacagaaattgcagaccctgcaagtttgaccgataataacccacacacaacacagcatccaaaaactgttaataa |
42237079 |
T |
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| Q |
148 |
caaaaatattactaataaaatatgnnnnnnntgttaacatagacaccagaaacattgttaaataagtaaaattattttcaaatttgtatagttaaatttt |
247 |
Q |
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| T |
42237078 |
caaaaatattactaataaaataatgaaaaaatgttaacatagacaccagaaacattgttaaataagtaaaattattttcaaatttgtatagttaaatttt |
42236979 |
T |
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| Q |
248 |
taaaaatgt |
256 |
Q |
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||||||||| |
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| T |
42236978 |
taaaaatgt |
42236970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 42236857 - 42236799
Alignment:
| Q |
261 |
gaagcagtatcagtatcacattgatgattaatctgcattacctgaaaccgccggagcat |
319 |
Q |
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| T |
42236857 |
gaagcagtatcagtatcacattgatgattactctgcattacctgaaaccgcgggagcat |
42236799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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