View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7310_low_4 (Length: 550)

Name: NF7310_low_4
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7310_low_4
NF7310_low_4
[»] chr1 (36 HSPs)
chr1 (11-533)||(31745095-31745616)
chr1 (313-459)||(40377012-40377158)
chr1 (312-459)||(7549813-7549960)
chr1 (321-434)||(36393479-36393592)
chr1 (313-434)||(50974564-50974685)
chr1 (327-459)||(45584509-45584641)
chr1 (313-459)||(31652593-31652738)
chr1 (312-459)||(44719151-44719298)
chr1 (342-434)||(4039621-4039713)
chr1 (313-434)||(5851530-5851649)
chr1 (329-435)||(25302066-25302172)
chr1 (358-459)||(25095579-25095680)
chr1 (321-456)||(34596118-34596250)
chr1 (348-436)||(45753443-45753531)
chr1 (313-407)||(12148289-12148383)
chr1 (350-459)||(34445639-34445748)
chr1 (321-429)||(12636305-12636414)
chr1 (321-434)||(40203076-40203189)
chr1 (351-434)||(5115634-5115717)
chr1 (350-456)||(28672315-28672420)
chr1 (315-436)||(5787434-5787554)
chr1 (320-402)||(42850094-42850176)
chr1 (327-404)||(50222611-50222688)
chr1 (347-434)||(33744159-33744246)
chr1 (313-408)||(48947225-48947320)
chr1 (318-459)||(13954126-13954271)
chr1 (347-429)||(39241430-39241512)
chr1 (347-403)||(48253319-48253375)
chr1 (330-409)||(44442270-44442349)
chr1 (348-433)||(3338051-3338137)
chr1 (381-435)||(5597710-5597764)
chr1 (397-459)||(27396102-27396164)
chr1 (314-412)||(50328308-50328405)
chr1 (347-440)||(14774091-14774184)
chr1 (358-431)||(28171517-28171590)
chr1 (350-394)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (313-459)||(49446583-49446730)
chr4 (320-459)||(44646522-44646661)
chr4 (321-434)||(44647879-44647992)
chr4 (314-458)||(42197007-42197150)
chr4 (338-459)||(6316821-6316942)
chr4 (328-440)||(9802621-9802732)
chr4 (316-431)||(20390023-20390138)
chr4 (327-442)||(42844030-42844145)
chr4 (313-433)||(41468080-41468200)
chr4 (337-431)||(33982423-33982517)
chr4 (319-409)||(44088286-44088376)
chr4 (347-455)||(25196110-25196218)
chr4 (324-417)||(50115059-50115149)
chr4 (358-459)||(40480205-40480306)
chr4 (347-434)||(12103864-12103951)
chr4 (321-434)||(24395194-24395308)
chr4 (328-418)||(49144774-49144864)
chr4 (313-394)||(38494748-38494829)
chr4 (380-459)||(28165362-28165442)
chr4 (348-430)||(39727579-39727660)
chr4 (347-459)||(50086432-50086543)
chr4 (358-431)||(34235910-34235984)
chr4 (328-394)||(36721591-36721657)
chr4 (316-425)||(49769110-49769219)
chr4 (358-417)||(31871090-31871149)
chr4 (329-459)||(52373050-52373181)
chr4 (312-394)||(41370157-41370239)
chr4 (329-418)||(1696194-1696283)
chr4 (361-434)||(53919863-53919936)
chr4 (342-434)||(27346293-27346385)
chr4 (361-436)||(5387947-5388022)
chr4 (331-433)||(51105918-51106020)
chr4 (380-429)||(27706954-27707003)
chr4 (328-436)||(27981368-27981477)
chr4 (398-459)||(44088211-44088272)
chr4 (330-459)||(52650697-52650826)
chr4 (347-435)||(11875452-11875539)
chr4 (360-459)||(23230272-23230372)
chr4 (347-459)||(47560596-47560707)
[»] chr3 (29 HSPs)
chr3 (313-459)||(34758899-34759045)
chr3 (313-458)||(54911988-54912133)
chr3 (313-434)||(18399149-18399271)
chr3 (321-458)||(30687077-30687214)
chr3 (320-459)||(27968170-27968307)
chr3 (320-459)||(52340118-52340257)
chr3 (329-447)||(38388694-38388812)
chr3 (348-459)||(28434481-28434591)
chr3 (358-459)||(779710-779810)
chr3 (342-459)||(38704969-38705086)
chr3 (325-423)||(7754772-7754871)
chr3 (321-434)||(4033026-4033138)
chr3 (321-412)||(19898100-19898191)
chr3 (347-414)||(55110042-55110109)
chr3 (321-458)||(25548196-25548333)
chr3 (356-430)||(43749507-43749581)
chr3 (348-418)||(53433211-53433281)
chr3 (376-431)||(1680511-1680566)
chr3 (347-438)||(2831538-2831629)
chr3 (350-434)||(39976721-39976804)
chr3 (339-414)||(54955783-54955859)
chr3 (381-435)||(11404700-11404754)
chr3 (358-408)||(40546348-40546398)
chr3 (127-188)||(9213512-9213572)
chr3 (422-459)||(29497248-29497285)
chr3 (414-459)||(29611990-29612035)
chr3 (347-403)||(21490626-21490682)
chr3 (358-422)||(30463992-30464056)
chr3 (376-416)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (316-459)||(8247037-8247180)
chr5 (314-459)||(3263717-3263862)
chr5 (313-456)||(19692696-19692840)
chr5 (320-431)||(5356295-5356406)
chr5 (313-433)||(35395184-35395304)
chr5 (314-459)||(10051700-10051845)
chr5 (318-459)||(28793305-28793446)
chr5 (320-457)||(1354345-1354481)
chr5 (313-431)||(22473432-22473551)
chr5 (338-434)||(21582367-21582463)
chr5 (350-452)||(14042440-14042542)
chr5 (336-433)||(31889611-31889709)
chr5 (376-459)||(4725897-4725979)
chr5 (318-404)||(142350-142436)
chr5 (382-436)||(22871913-22871967)
chr5 (350-435)||(3758194-3758279)
chr5 (350-422)||(26663642-26663714)
chr5 (350-422)||(26935237-26935309)
chr5 (321-456)||(14474998-14475133)
chr5 (381-459)||(27650866-27650944)
chr5 (380-433)||(37976444-37976497)
chr5 (381-435)||(12933327-12933381)
chr5 (376-422)||(24241210-24241256)
chr5 (350-407)||(24241039-24241096)
chr5 (312-372)||(43145883-43145943)
[»] chr2 (27 HSPs)
chr2 (312-459)||(8789826-8789973)
chr2 (314-459)||(44941072-44941216)
chr2 (316-459)||(20682990-20683133)
chr2 (320-434)||(8773670-8773784)
chr2 (338-436)||(4238341-4238438)
chr2 (313-436)||(18053008-18053130)
chr2 (321-434)||(42945012-42945125)
chr2 (348-459)||(6761751-6761862)
chr2 (321-431)||(2393038-2393148)
chr2 (320-434)||(34546265-34546379)
chr2 (321-447)||(42966938-42967066)
chr2 (349-421)||(1070568-1070639)
chr2 (314-459)||(5961954-5962101)
chr2 (78-161)||(10069229-10069312)
chr2 (345-459)||(3882586-3882700)
chr2 (364-456)||(433551-433643)
chr2 (383-435)||(8898861-8898913)
chr2 (347-459)||(18227092-18227204)
chr2 (350-433)||(2825983-2826066)
chr2 (380-447)||(13442636-13442703)
chr2 (347-431)||(35228732-35228816)
chr2 (376-434)||(3199541-3199599)
chr2 (329-436)||(7271769-7271880)
chr2 (321-458)||(14102297-14102435)
chr2 (350-435)||(31448315-31448400)
chr2 (376-429)||(45212057-45212110)
chr2 (347-435)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (313-433)||(30412910-30413030)
chr7 (313-459)||(8170001-8170147)
chr7 (313-423)||(48137789-48137899)
chr7 (340-434)||(42493703-42493798)
chr7 (328-459)||(47507580-47507711)
chr7 (317-455)||(38452146-38452283)
chr7 (332-429)||(2964049-2964146)
chr7 (327-459)||(16878677-16878809)
chr7 (321-432)||(44391426-44391537)
chr7 (317-393)||(46684550-46684626)
chr7 (345-436)||(5248088-5248179)
chr7 (342-434)||(2741168-2741260)
chr7 (318-436)||(15034793-15034911)
chr7 (323-431)||(43670409-43670517)
chr7 (313-388)||(47305516-47305592)
chr7 (350-439)||(676400-676488)
chr7 (348-447)||(37352436-37352535)
chr7 (358-442)||(33887887-33887971)
chr7 (315-459)||(36015002-36015141)
chr7 (319-433)||(36285774-36285887)
chr7 (376-459)||(45375399-45375483)
chr7 (347-394)||(15995924-15995971)
chr7 (347-456)||(35754017-35754126)
chr7 (331-407)||(44495238-44495314)
chr7 (347-394)||(14574768-14574815)
chr7 (358-465)||(35599837-35599944)
chr7 (347-436)||(31477085-31477175)
chr7 (347-460)||(10031945-10032058)
chr7 (384-437)||(25120218-25120271)
chr7 (321-388)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (313-459)||(31206280-31206426)
chr8 (321-429)||(38956884-38956992)
chr8 (312-436)||(5217747-5217869)
chr8 (329-434)||(45368729-45368834)
chr8 (320-433)||(5020051-5020162)
chr8 (321-432)||(20169716-20169827)
chr8 (318-459)||(9632898-9633040)
chr8 (380-462)||(33636685-33636767)
chr8 (330-456)||(39691121-39691247)
chr8 (321-434)||(7044329-7044442)
chr8 (359-459)||(24103087-24103187)
chr8 (367-459)||(39932721-39932813)
chr8 (321-459)||(10335020-10335159)
chr8 (396-434)||(36819755-36819793)
chr8 (384-459)||(37564393-37564468)
chr8 (396-458)||(2124141-2124203)
chr8 (399-459)||(5968377-5968437)
chr8 (347-459)||(22209376-22209488)
[»] chr6 (13 HSPs)
chr6 (313-434)||(12383008-12383129)
chr6 (321-434)||(16442075-16442188)
chr6 (336-431)||(8176324-8176419)
chr6 (350-433)||(12307821-12307904)
chr6 (330-459)||(31702747-31702874)
chr6 (348-456)||(7465451-7465558)
chr6 (315-390)||(22695473-22695549)
chr6 (387-458)||(22696000-22696071)
chr6 (332-430)||(35241410-35241509)
chr6 (321-434)||(6048268-6048381)
chr6 (132-184)||(32045160-32045211)
chr6 (350-431)||(26311807-26311889)
chr6 (358-459)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (358-459)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Original strand, 31745095 - 31745616
Alignment:
Q  11 atggacatcaaaaaagagtctataccaattaccaaaataatagactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatcta 110  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31745095 atggacctcaaaaaagagtctataccaattaccaaaataatatactctctctagtcctatttaaaataaatatttaggttaacaaacgttaatggatctg 31745194  T
Q  111 gtccaattatttaactagattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtattttatagtaagagaatgagattcaa 210  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  31745195 gtccaattatttaactagatacatcaacttttattgatttaaatgtctttttataaaaaggaccggatggagtattttatagtaagagaataagattcaa 31745294  T
Q  211 taatttattaaaaaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttcgtccatatacttttcttgctgattaccaaggcac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31745295 taatttattaaaaaatactaaaaatggtaattgtaaactttgaacatatttttaagcaccattttggtccatatacttttcttgctgattaccgaggcac 31745394  T
Q  311 taggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta 410  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745395 taggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta 31745494  T
Q  411 ttcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaattaacnnnnnnnattaactcaacactgttcttgtcataattaaatattt 510  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  31745495 ttcttttagaatctttaaagagtgcctcggaggcactagttaacaagacaattaac-ttttttattaactcaacactgttcttgtcataattaaatattt 31745593  T
Q  511 ttgttatgacatgttttattgat 533  Q
     ||||||||||||||||||||||    
T  31745594 atgttatgacatgttttattgat 31745616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 313 - 459
Target Start/End: Complemental strand, 40377158 - 40377012
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    ||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||| || | ||||| |||||||||||||| ||||||||| |||| ||    
T  40377158 ggcactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttctt 40377059  T
Q  413 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| ||||| |||||||||| |   | |||||| |||||||||||    
T  40377058 cttttggaatccttaaagagtgcccaaggggcactcgttaacaagac 40377012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 312 - 459
Target Start/End: Complemental strand, 7549960 - 7549813
Alignment:
Q  312 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 411  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||||| |||||||||||   ||||||||||||||||||| ||||||||| |||| |    
T  7549960 aggcactagctaaggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttct 7549861  T
Q  412 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||  |||  |||||||||||| ||  | |||| |||||||||||    
T  7549860 tcttttgaaattcttaaagagtgtcccgaggacactcgttaacaagac 7549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 36393592 - 36393479
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| |||||| ||||||| |||||||  |    
T  36393592 ttaagacctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaa 36393493  T
Q  421 atctttaaagagtg 434  Q
    ||| ||||||||||    
T  36393492 atccttaaagagtg 36393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 50974564 - 50974685
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||| |||||| ||||||||| |||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||||||| ||    
T  50974564 ggcactcgttaagacctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataatttttt 50974663  T
Q  413 cttttagaatctttaaagagtg 434  Q
    |||||  |||| || |||||||    
T  50974664 cttttgaaatccttcaagagtg 50974685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 327 - 459
Target Start/End: Complemental strand, 45584641 - 45584509
Alignment:
Q  327 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 426  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||   |||  |||||||| ||||| |||||||||||||| ||||||| ||||| ||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  427 aaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||| | ||| |||| | |||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagac 45584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 459
Target Start/End: Complemental strand, 31652738 - 31652593
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||  |||  |||||||||||||| |||||||||||||| ||    
T  31652738 ggcactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttctt 31652639  T
Q  413 cttttagaatctttaaagagtgtct-cggaggcactggttaacaagac 459  Q
     ||||  |||| ||||||||| ||| ||||| |||| |||||||||||    
T  31652638 -ttttgaaatccttaaagagt-tctccggagacactcgttaacaagac 31652593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 312 - 459
Target Start/End: Complemental strand, 44719298 - 44719151
Alignment:
Q  312 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 411  Q
    ||||||||||||||  |||||||| |||| ||||||||||||| |||||||||| ||||||   ||||| ||||||| ||||| |||||||||||| |||    
T  44719298 aggcactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatat 44719199  T
Q  412 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    | |||| ||||| ||||| |||||| ||| | |||| |||||||||||    
T  44719198 ttttttggaatccttaaaaagtgtcccggggacactcgttaacaagac 44719151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 342 - 434
Target Start/End: Original strand, 4039621 - 4039713
Alignment:
Q  342 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    ||||||| ||||||| |||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  4039621 ttatcataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtg 4039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 5851649 - 5851530
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||||| ||| |||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| ||    
T  5851649 ggcactagataaagcctttaaatggtaacttatcatgaa--tatttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttctt 5851552  T
Q  413 cttttagaatctttaaagagtg 434  Q
    |||||  |||| ||||||||||    
T  5851551 cttttgaaatccttaaagagtg 5851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 25302172 - 25302066
Alignment:
Q  329 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 428  Q
    ||||||| |||||||||||||||||||||||||||||||| || || ||||||||| ||||||||| ||||| ||| |||| || |||| ||||| ||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  429 agagtgt 435  Q
    |||||||    
T  25302072 agagtgt 25302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 358 - 459
Target Start/End: Complemental strand, 25095680 - 25095579
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||  |||| |||| | |||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtgtcatggagacactcgctaacaag 25095581  T
Q  458 ac 459  Q
    ||    
T  25095580 ac 25095579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 456
Target Start/End: Original strand, 34596118 - 34596250
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||||||||  |||||| | |||||| |||||||||||||||||| || ||||||||||||||| ||  |||||||||||||| ||||||||||    
T  34596118 ttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttgaatt--ttataaaataatttcttcttttaga 34596215  T
Q  421 atctttaaagagtgtctcggaggcactggttaacaa 456  Q
    ||| |||| || |||| |||||||||  ||||||||    
T  34596216 atccttaatgaatgtc-cggaggcacccgttaacaa 34596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 45753531 - 45753443
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 436  Q
    ||||||| |||||||||||||||| || ||| |||||||||||| || || | ||||||||| ||||||||||||||||||||||||||    
T  45753531 tgaaaatttgtgtaatcaatgcattgaaaattgaaatatttgacatttttctgaaataatttcttcttttagaatctttaaagagtgtc 45753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 12148289 - 12148383
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 407  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |  |||| |||||||| ||||| | ||||||||||    
T  12148289 ggcactagttaaagtctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 459
Target Start/End: Complemental strand, 34445748 - 34445639
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 449  Q
    |||| |||| |||||||||||| |  ||||||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||   ||| |||||| |    
T  34445748 aaaacatgtctaatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcg 34445649  T
Q  450 ttaacaagac 459  Q
    ||||||||||    
T  34445648 ttaacaagac 34445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 321 - 429
Target Start/End: Original strand, 12636305 - 12636414
Alignment:
Q  321 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    ||||| |||||||||||||| || |  |||||||||||||||||||||| || |  |||||||||| |||||||| | ||||||| |||||||||||| |    
T  12636305 ttaagacctttaaatagtaatttttttatgaaaatatgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattatttattcttttgg 12636404  T
Q  420 aatctttaaa 429  Q
    |||| |||||    
T  12636405 aatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 40203076 - 40203189
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    |||||| |||||||| |||||||    |||||||||||||||||||||||| |  ||| ||||||||||||||| |||| ||||||||| || ||||  |    
T  40203076 ttaaggtctttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgta 40203175  T
Q  421 atctttaaagagtg 434  Q
    ||| ||||||||||    
T  40203176 atccttaaagagtg 40203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 351 - 434
Target Start/End: Original strand, 5115634 - 5115717
Alignment:
Q  351 aaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    |||| |||||||| ||||||| |  ||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5115634 aaatttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtg 5115717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 28672315 - 28672420
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 449  Q
    ||||||||||||||||||||||  | |||| |||||||||||||| ||| |||||||||  || |||||||||  || |||||||||||||| |||||      
T  28672315 aaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgctt-aagagtgtctcggatgcactca 28672413  T
Q  450 ttaacaa 456  Q
    |||||||    
T  28672414 ttaacaa 28672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 436
Target Start/End: Original strand, 5787434 - 5787554
Alignment:
Q  315 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 414  Q
    |||||||||| | |||||||   ||||||||||  |||||||||||||| ||||||| |  ||| ||||||||| ||| | |||||||||| ||| ||||    
T  5787434 cactagttaaagtctttaaaatataacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttcttct 5787533  T
Q  415 tttagaatctttaaagagtgtc 436  Q
    ||| ||||| ||||||||||||    
T  5787534 ttt-gaatccttaaagagtgtc 5787554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 42850094 - 42850176
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaa 402  Q
    |||||| |||||||||  ||| ||||||| ||||||| | |||| |||||||||| ||||||||||||| ||||| |||||||    
T  42850094 gttaagacctttaaatgataatttatcataaaaatatatataattaatgcatcgaaaatcgaaatatttaacttttttataaa 42850176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 50222611 - 50222688
Alignment:
Q  327 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 404  Q
    |||||||||||||| || | ||||||||| ||||||||||||||| || |||  |||||||||| ||| |||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttttttataaaat 50222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 33744159 - 33744246
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    ||||||| || |||||||||||||| || ||||||||||||||||||| | | |||||||||  || ||||| |||  ||||||||||    
T  33744159 atgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtg 33744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 48947320 - 48947225
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 408  Q
    |||||||||||||| |||||||| ||||||| | |||||||| |||||||||| ||||| |  ||| ||||  |||||| || ||| |||||||||    
T  48947320 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataatt 48947225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 459
Target Start/End: Original strand, 13954126 - 13954271
Alignment:
Q  318 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 417  Q
    ||||||||||||||||||   || ||||  ||||||| | |||||||| ||||| |  |||| |||| ||||| ||| ||||||| |||||| ||||| |    
T  13954126 tagttaaggcctttaaatgaaaatttattgtgaaaatgtatgtaatca-tgcattggaaatcaaaatttttgatttttttataaagtaatttcttcttct 13954224  T
Q  418 agaatctttaaagagtgt-----ctcggaggcactggttaacaagac 459  Q
    |||||| |||||||||||     |||||||||||  |||||||||||    
T  13954225 agaatccttaaagagtgttccacctcggaggcacccgttaacaagac 13954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 39241430 - 39241512
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    ||||||| |||||||||||||||||||| |||  ||||||||   ||| ||||||||||| ||||| ||||| |||| |||||    
T  39241430 atgaaaacatgtgtaatcaatgcatcgaaaattaaaatatttattttttttataaaataaattatttttttaaaatccttaaa 39241512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 48253375 - 48253319
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 403  Q
    |||||||||||| ||||||||| || || |||||||||| |||||||| ||||||||    
T  48253375 atgaaaatatgtataatcaatgtattgaaaatcgaaatagttgacttttttataaaa 48253319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 44442349 - 44442270
Alignment:
Q  330 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 409  Q
    |||||||||||||| | || |||||||||||| | |||| || || ||| ||||||||||||||| ||| | ||||||||    
T  44442349 ttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataattt 44442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 3338051 - 3338137
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagt 433  Q
    ||||||| | |||||||||||||| || ||| |||||| || | ||| || || ||||||||| |||||||||||| ||||||||||    
T  3338051 tgaaaatttatgtaatcaatgcattgaaaattgaaatacttaattttttttatgaaataatttcttcttttagaatgtttaaagagt 3338137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 5597764 - 5597710
Alignment:
Q  381 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||    
T  5597764 aaatatttaacttttttatagaataatttcttcttttaaaatatttaaagagtgt 5597710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 459
Target Start/End: Complemental strand, 27396164 - 27396102
Alignment:
Q  397 tataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||||||| || |||||||||  ||||||| |||||||| || ||| |||||||||||    
T  27396164 tataaaataatttcttattttagaattcttaaagaatgtctcggtggtacttgttaacaagac 27396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 412
Target Start/End: Original strand, 50328308 - 50328405
Alignment:
Q  314 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||| ||||| | |||||||  ||||||||||| ||||||||| |||| || | ||| | |||| |||||||| | ||| |||||||||||||||||    
T  50328308 gcactaattaagacttttaaatgataacttatcataaaaatatgtataattaaagtatcaaaaatcaaaatattt-aattttttataaaataatttatt 50328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 14774184 - 14774091
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgg 440  Q
    |||||||| ||| || ||||||||| || ||||||||||||||| ||| | |  |||||||| ||| |||||||||  ||||||| | ||||||    
T  14774184 atgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataattgattattttagaatgcttaaagaatatctcgg 14774091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 28171517 - 28171590
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 431  Q
    |||||| |||||||  | ||| ||||||||| ||||| |||||||||||||| ||||||| ||||  |||||||    
T  28171517 tgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataattttttctttttgaatgcttaaaga 28171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 15549686 - 15549642
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 394  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||    
T  15549686 aaaatgtgtgtaatcaatgcattgaaaatcgaaatattttacttt 15549642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 313 - 459
Target Start/End: Original strand, 49446583 - 49446730
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || |    
T  49446583 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttct 49446682  T
Q  412 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||| ||||| |||||||||| | ||  |||||| |||||||||||    
T  49446683 tcttttggaatccttaaagagtgccccgagggcacttgttaacaagac 49446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 320 - 459
Target Start/End: Original strand, 44646522 - 44646661
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||      
T  44646522 gttaaggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttga 44646621  T
Q  420 aatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||| ||||||| || | ||| |||||| |||||||||||    
T  44646622 aatccttaaagaatgccccgggggcactcgttaacaagac 44646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 44647879 - 44647992
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||| |||||||||||||| ||| ||||||| ||    
T  44647879 ttaaggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttcttcttttgga 44647978  T
Q  421 atctttaaagagtg 434  Q
    ||||||||||||||    
T  44647979 atctttaaagagtg 44647992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 314 - 458
Target Start/End: Complemental strand, 42197150 - 42197007
Alignment:
Q  314 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 413  Q
    ||||||||||| | |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||| |||||||||| ||| | |||||||||||| |||    
T  42197150 gcactagttaaagtctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttcttc 42197051  T
Q  414 ttttagaatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    ||||||||| ||||||||||||  || ||||||| ||||||||||    
T  42197050 ttttagaat-tttaaagagtgttccgaaggcactcgttaacaaga 42197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 338 - 459
Target Start/End: Original strand, 6316821 - 6316942
Alignment:
Q  338 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 437  Q
    |||||||||||||||||||||||||||||||||| || |||| |||| |||| |||| ||||||||| |||| |||||||  ||||||||||||||| |     
T  6316821 taacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagagtgccc 6316920  T
Q  438 cggaggcactggttaacaagac 459  Q
    |||||||||| |||||||||||    
T  6316921 cggaggcactcgttaacaagac 6316942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 328 - 440
Target Start/End: Original strand, 9802621 - 9802732
Alignment:
Q  328 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 427  Q
    ||||||| | ||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  9802621 ctttaaagaataacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaat-ttta 9802719  T
Q  428 aagagtgtctcgg 440  Q
    |||||||||||||    
T  9802720 aagagtgtctcgg 9802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 20390138 - 20390023
Alignment:
Q  316 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 415  Q
    |||||||||||| ||||||| |||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||| ||||||||| |||| || ||    
T  20390138 actagttaaggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgtt 20390039  T
Q  416 ttagaatctttaaaga 431  Q
    || ||||  |||||||    
T  20390038 ttggaattcttaaaga 20390023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 327 - 442
Target Start/End: Complemental strand, 42844145 - 42844030
Alignment:
Q  327 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 426  Q
    ||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||  | ||||  |||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcgttttttgaaatcttt 42844046  T
Q  427 aaagagtgtctcggag 442  Q
     ||||||||| |||||    
T  42844045 caagagtgtcccggag 42844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 313 - 433
Target Start/End: Complemental strand, 41468200 - 41468080
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||  |||||||||||||||   ||||| ||||||| ||||| |||||| ||||||| ||    
T  41468200 ggcactagttaaggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttctt 41468101  T
Q  413 cttttagaatctttaaagagt 433  Q
    ||||| ||||  |||||||||    
T  41468100 cttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 431
Target Start/End: Complemental strand, 33982517 - 33982423
Alignment:
Q  337 gtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 431  Q
    |||||||||||||||||||| ||||||||||| ||||  ||||||||||||| ||||| |||||||||||||| |||||||  |||| |||||||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaaga 33982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 44088376 - 44088286
Alignment:
Q  319 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 409  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||| ||| | ||||||||||||    
T  44088376 agttaaggactttaaatagtaacttatcatgaagatatgtgtaatcaatgcaccaaaaatcaaaatatttgattttttaataaaataattt 44088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 347 - 455
Target Start/End: Complemental strand, 25196218 - 25196110
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    ||||||| ||||||||| ||||  | |  |||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  25196218 atgaaaacatgtgtaattaatgtcttggaaatcaaaatatttgacttttttataaattaattttttcttttagaatccttaaagagtgtttcggaggcac 25196119  T
Q  447 tggttaaca 455  Q
    | |||||||    
T  25196118 tcgttaaca 25196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 50115149 - 50115059
Alignment:
Q  324 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 417  Q
    |||||||||||| ||||||||||||   |||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| |||||||    
T  50115149 aggcctttaaatggtaacttatcat---aatatgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttctttt 50115059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 40480205 - 40480306
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  40480205 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 40480304  T
Q  458 ac 459  Q
    ||    
T  40480305 ac 40480306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 12103864 - 12103951
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    ||||||||||||||||||||||  | |  ||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| ||||    
T  12103864 atgaaaatatgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaaagtg 12103951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 24395194 - 24395308
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatg-catcgagaatcgaaatatttgac-tttattataaaataatttattctttta 418  Q
    ||||| |||||| ||||||||||   |||||||||||||||||||||| | | || |||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24395194 ttaagacctttatatagtaactttgtatgaaaatatgtgtaatcaatgtcttaga-aatcgaaatatttgaccttttttataaattaatttcttctttta 24395292  T
Q  419 gaatctttaaagagtg 434  Q
    ||||| ||||||||||    
T  24395293 gaatccttaaagagtg 24395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 49144864 - 49144774
Alignment:
Q  328 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 418  Q
    |||||||| |||| || |||| ||||||| ||||||||||||||||| |||| |||| ||| ||||| |||||||||||||| ||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttta 49144774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 313 - 394
Target Start/End: Original strand, 38494748 - 38494829
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 394  Q
    |||||||||||||| ||||| ||  ||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  38494748 ggcactagttaaggtctttatatgataatttatcataaaaatatgtgtaatcaatgcatcgaaaatcgaaagatttgccttt 38494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 459
Target Start/End: Complemental strand, 28165442 - 28165362
Alignment:
Q  380 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |||| | |||||| |||||||||||    
T  28165442 gaaatatttgattttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagac 28165362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 39727579 - 39727660
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 430  Q
    ||||||| | |||||||||||||||   ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  39727579 tgaaaatttatgtaatcaatgcatcagaaattgaaatatttgacttt-ttatagaataatttattcttttagaatccttaaag 39727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 459
Target Start/End: Original strand, 50086432 - 50086543
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    ||||||||||||||| ||||||||| || |||| |||||||||| ||| ||| | |||||||  || |||| |||| |||||||||| || ||| |||||    
T  50086432 atgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagtttcccgg-ggcac 50086530  T
Q  447 tggttaacaagac 459  Q
    | |||||||||||    
T  50086531 tcgttaacaagac 50086543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 34235984 - 34235910
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaaga 431  Q
    |||||||||||||| || ||| ||||| ||||||||| || ||||||||||||||||||||| ||| ||||||||    
T  34235984 tgtaatcaatgcattgaaaattgaaatttttgactttttttataaaataatttattcttttaaaatgtttaaaga 34235910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 36721591 - 36721657
Alignment:
Q  328 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 394  Q
    ||||||||||||| || | ||| |||| |||||||||||||||| |||||| |||||||||||||||    
T  36721591 ctttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttt 36721657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 49769110 - 49769219
Alignment:
Q  316 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 415  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||||| | ||   |||  |||| ||  ||||| ||||||||| |||| |||||    
T  49769110 actacttaagacctttaaatggtaacttatcataaaaatatgtgtaatcaattcgtcataaattaaaattttcaacttttttataaaattatttcttctt 49769209  T
Q  416 ttagaatctt 425  Q
    ||| ||||||    
T  49769210 ttaaaatctt 49769219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 31871090 - 31871149
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 417  Q
    ||||||||||||||||  ||| ||||||||| ||||| |||||||||||||| |||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttctttt 31871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 459
Target Start/End: Original strand, 52373050 - 52373181
Alignment:
Q  329 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatcttta 427  Q
    |||||||||||| || |  ||||||| ||||||||  |||||| || |||   ||||||||||||| || || ||||||||| || ||| | |||| |||    
T  52373050 tttaaatagtaattttttctgaaaatttgtgtaatttatgcattgaaaattataatatttgactttttttatgaaataatttcttatttcaaaatcctta 52373149  T
Q  428 aagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||| |||||| ||| |||||||||||    
T  52373150 aagagtgtcccggaggtactcgttaacaagac 52373181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 394
Target Start/End: Original strand, 41370157 - 41370239
Alignment:
Q  312 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 394  Q
    |||||||  |||||| |||| |||||||| || | |||||||| |||||||||||||||| || ||| ||||||||| |||||    
T  41370157 aggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttt 41370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 418
Target Start/End: Original strand, 1696194 - 1696283
Alignment:
Q  329 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 418  Q
    ||||||||||||||| |  ||||||| | ||||||||||||||||  ||| |||||||||| |||| ||||  |||||| | ||||||||    
T  1696194 tttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatcttctttta 1696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 53919936 - 53919863
Alignment:
Q  361 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    |||||||||||||  ||| ||||| ||||||||| ||||| ||||||||||||||||  |||  ||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtg 53919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 27346385 - 27346293
Alignment:
Q  342 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    ||||||| ||||| ||| |||| |||||| |   |||| |||| ||||||||| ||||||||||| || || |||||||||| ||||||||||    
T  27346385 ttatcataaaaatgtgtataataaatgcaccagaaatcaaaatctttgacttttttataaaataaattctttttttagaatccttaaagagtg 27346293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 436
Target Start/End: Original strand, 5387947 - 5388022
Alignment:
Q  361 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 436  Q
    ||||||||||| || ||||||||||||| | ||| |  ||||||||||| |||||||| |||||||| | ||||||    
T  5387947 aatcaatgcattgaaaatcgaaatatttaattttttattaaaataatttcttcttttaaaatctttataaagtgtc 5388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 433
Target Start/End: Complemental strand, 51106020 - 51105918
Alignment:
Q  331 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 430  Q
    ||||||||||||  | ||||||||||| ||||||  || || || |||  |||||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  51106020 taaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttgacttttttaaataataattgtttattttagaatatttaaag 51105921  T
Q  431 agt 433  Q
    |||    
T  51105920 agt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 27706954 - 27707003
Alignment:
Q  380 gaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    ||||||||||||||| ||||||||| |||| || |||||||||| |||||    
T  27706954 gaaatatttgactttcttataaaatgatttcttattttagaatcattaaa 27707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 436
Target Start/End: Complemental strand, 27981477 - 27981368
Alignment:
Q  328 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt-agaatcttt 426  Q
    ||||||||||||||||   ||| ||||||||||||| |||| || || ||| ||||||||| | ||| | ||||| |||||| || |||| | ||| |||    
T  27981477 ctttaaatagtaactttgtatgtaaatatgtgtaattaatgtattgaaaattgaaatatttaattttttcataaattaatttttttttttaaaaattttt 27981378  T
Q  427 aaagagtgtc 436  Q
    ||||||||||    
T  27981377 aaagagtgtc 27981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 44088272 - 44088211
Alignment:
Q  398 ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||||||| |||||||||||| |||||| | ||   |||||||||| |||||||||||    
T  44088272 ataaaataatttcttcttttagaatttttaaaaattgctccggaggcactcgttaacaagac 44088211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 459
Target Start/End: Original strand, 52650697 - 52650826
Alignment:
Q  330 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    ||||||||||| || | |||||||  |||||||||| || || || ||| ||||  |||||| ||  || | |||||||| ||  ||||| || ||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaa 52650796  T
Q  430 gagtgtctcggaggcactggttaacaagac 459  Q
    ||||||  |||||||||| |||||||||||    
T  52650797 gagtgttccggaggcactcgttaacaagac 52650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 11875452 - 11875539
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||||||| ||| |||||||||||| || |||  |||||||| | |||  ||||||||||||| || ||||| || |||||||||||||    
T  11875452 atgaaaatgtgtataatcaatgcattgaaaatt-aaatatttaatttttgtataaaataatttctttttttaaaagctttaaagagtgt 11875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 459
Target Start/End: Original strand, 23230272 - 23230372
Alignment:
Q  360 taatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    |||||||||||| || ||| |||| |||| ||||| || ||  |||||||| | ||||| ||||  |||||||||||||||||| |||| ||||| ||||    
T  23230272 taatcaatgcattgaaaattgaaacatttaacttttttcatggaataatttctccttttggaatgcttaaagagtgtctcggagacactcgttaataaga 23230371  T
Q  459 c 459  Q
    |    
T  23230372 c 23230372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 47560707 - 47560596
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    ||||||||  |||||||||||| ||  | |||| ||| |||||| ||| ||| |||||||||  || |||| ||||  ||||||||||||||| || |||    
T  47560707 atgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttgattttttta-aaaataattgcttattttggaatgattaaagagtgtctcgaagacac 47560609  T
Q  447 tggttaacaagac 459  Q
    | |||||||||||    
T  47560608 tcgttaacaagac 47560596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 313 - 459
Target Start/End: Complemental strand, 34759045 - 34758899
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||  || ||||||||||| ||||| |||||||||||||  ||    
T  34759045 ggcactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattactt 34758946  T
Q  413 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| ||||| |||||||||| | |||||||||| |||||||||||    
T  34758945 ctttttgaatccttaaagagtgccccggaggcactcgttaacaagac 34758899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 313 - 458
Target Start/End: Original strand, 54911988 - 54912133
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||| |||||||||| ||||||    
T  54911988 ggcactagttaaggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttatt 54912087  T
Q  413 cttttagaatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    ||||| ||||  ||||||||||  |||| | |||| ||||||||||    
T  54912088 cttttggaattcttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 18399149 - 18399271
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttat 411  Q
    |||| |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||| |||| ||||| |||| |    
T  18399149 ggcattagttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttct 18399248  T
Q  412 tcttttagaatctttaaagagtg 434  Q
    |||||| ||||| ||||||||||    
T  18399249 tcttttggaatccttaaagagtg 18399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 30687077 - 30687214
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||||||||||| | |||| || | ||||| ||| |||||| ||||||| ||||||||||    
T  30687077 ttaaggtctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttcttcttttaga 30687176  T
Q  421 atctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    ||| ||||||||| |||| ||| |||| ||||||||||    
T  30687177 atccttaaagagtatctctgagacactcgttaacaaga 30687214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 320 - 459
Target Start/End: Complemental strand, 27968307 - 27968170
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 418  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||| |||| |||| |||| |||||||     
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttg 27968209  T
Q  419 gaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| ||||| |||||| ||| |||||| |||||||||||    
T  27968208 gaatccttaaaaagtgtc-cgg-ggcactcgttaacaagac 27968170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 320 - 459
Target Start/End: Original strand, 52340118 - 52340257
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttta 418  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| |||||  ||| ||||||||| |||| ||| |||     
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttg 52340217  T
Q  419 gaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| |||||||||| |||||| | ||| |||||||||||    
T  52340218 gaatccttaaagagtgcctcgga-gaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 329 - 447
Target Start/End: Complemental strand, 38388812 - 38388694
Alignment:
Q  329 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 428  Q
    |||||||||||| || | || |||||||||||||||||||||  || |||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  38388812 tttaaatagtaaatttttataaaaatatgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttcttcttttagaatctttaa 38388713  T
Q  429 agagtgtctcggaggcact 447  Q
    | |||| | ||||||||||    
T  38388712 atagtgccccggaggcact 38388694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 348 - 459
Target Start/End: Complemental strand, 28434591 - 28434481
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 447  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||| ||| |||| |||||||||||| |||  |||||    
T  28434591 tgaaaatttatgtaatcaatgcatcgaaaatcaaaatatttgacttt-ttatgaaataatttattctcttaaaatccttaaagagtgtcccgggagcact 28434493  T
Q  448 ggttaacaagac 459  Q
     |||||||||||    
T  28434492 cgttaacaagac 28434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 779710 - 779810
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    |||||| ||||||| |  |||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  779710 tgtaatgaatgcattgcaaatcaaaatatttaactttttcataaaataatttattcttttagaatttttaaagagtgtct-ggaggcactcgttaacaag 779808  T
Q  458 ac 459  Q
    ||    
T  779809 ac 779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 38704969 - 38705086
Alignment:
Q  342 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgga 441  Q
    |||||||  |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||| ||||||| ||||  |||||||||   ||||     
T  38704969 ttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttgaattcttaaagagtacttcggg 38705068  T
Q  442 ggcactggttaacaagac 459  Q
    |||||| |||||||||||    
T  38705069 ggcactcgttaacaagac 38705086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 423
Target Start/End: Original strand, 7754772 - 7754871
Alignment:
Q  325 ggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatc 423  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||| ||| ||||||||| | || ||||||| |||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttttataaaattacttcttcttttggaatc 7754871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 4033138 - 4033026
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||||||||   || ||||||||||||| |||||||||| |||||||  ||||||||| ||||| ||| |||||||||||||| || |||||||    
T  4033138 ttaagtcctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttctttttttaga 4033040  T
Q  421 atctttaaagagtg 434  Q
    ||| ||||| ||||    
T  4033039 atccttaaaaagtg 4033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 321 - 412
Target Start/End: Original strand, 19898100 - 19898191
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    ||||| |||||| || |||| || | ||||||||||||||||||||||||| || ||| ||||||||||| |||  ||||||||||||||||    
T  19898100 ttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataatttatt 19898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 55110109 - 55110042
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 414  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  55110109 atgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattttttct 55110042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 25548196 - 25548333
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 419  Q
    ||||| |||||||||  ||| || | |||||||||||||||||||||||||    ||| ||||||||| || ||| |||||||||| ||| |||||||||    
T  25548196 ttaagacctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaactttttttataaaatattttcttcttttag 25548295  T
Q  420 aatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    | || ||||||||||| |||| || ||| ||||||||||    
T  25548296 agtccttaaagagtgt-tcgggggtactcgttaacaaga 25548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 43749507 - 43749581
Alignment:
Q  356 tgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 430  Q
    ||||||||||||  || || ||| ||||||||||||||| | ||| |||||||||||||||||||||| ||||||    
T  43749507 tgtgtaatcaatatatagaaaattgaaatatttgactttttaatagaataatttattcttttagaatccttaaag 43749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 348 - 418
Target Start/End: Original strand, 53433211 - 53433281
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 418  Q
    ||||||| | ||||||||||||||||| |||  |||||||||||||| ||||| |||||||| ||||||||    
T  53433211 tgaaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttctttta 53433281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 1680511 - 1680566
Alignment:
Q  376 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 431  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  1680511 aatcaaaatatttgacttttttataaattaatttattctttttgaatccttaaaga 1680566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 2831629 - 2831538
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctc 438  Q
    |||||||  ||| |||||| |||||  | ||| ||||||||||||||||||| |||||||||| ||  ||| ||||| ||||||||||||||    
T  2831629 atgaaaacttgtataatcattgcatttaaaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtctc 2831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 39976804 - 39976721
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    |||||| |||||||||||| || || ||| |||| |||||||||| ||| ||||||||| ||| ||||||||| || ||||||||    
T  39976804 aaaatacgtgtaatcaatgtattgaaaatagaaacatttgactttttta-aaaataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 54955783 - 54955859
Alignment:
Q  339 aacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttat-tataaaataatttattct 414  Q
    ||||| |||||||||||| ||||||  ||||||| | |||| |||||||||| ||| | ||||||||||||||||||    
T  54955783 aacttttcatgaaaatatatgtaatttatgcatcaaaaatcaaaatatttgattttttctataaaataatttattct 54955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 11404754 - 11404700
Alignment:
Q  381 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||||||| ||||| ||||||||||||||||| ||||  |||||| |||||||||    
T  11404754 aaatatttaacttttttataaaataatttatttttttttaatcttaaaagagtgt 11404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 408  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 9213572 - 9213512
Alignment:
Q  127 agattcattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagtatttt 188  Q
    |||| ||| |||||||||||| | ||||||||||| ||||| |||| |||||||||||||||    
T  9213572 agatacatcaacttttgttgactaaaatgtctttt-ataaataggaccggagggagtatttt 9213512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 29497248 - 29497285
Alignment:
Q  422 tctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  29497248 tctttaaagaatgtctcggaggcactcgttaacaagac 29497285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 29612035 - 29611990
Alignment:
Q  414 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  29612035 ttttagaatgtttaaagagtgtcccgggggcactcgttaacaagac 29611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 21490626 - 21490682
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 403  Q
    |||||||||||||| ||||||| || || ||| ||||||||||||||| ||| ||||    
T  21490626 atgaaaatatgtgtcatcaatgaattgaaaattgaaatatttgacttttttacaaaa 21490682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 30463992 - 30464056
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 422  Q
    ||||||||||||||  | ||| ||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttcttcttttggaat 30464056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 37775371 - 37775411
Alignment:
Q  376 aatcgaaatatttgactttattataaaataatttattcttt 416  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  37775371 aatcgaaatatttaacttttttataaaataatttcttcttt 37775411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 459
Target Start/End: Complemental strand, 8247180 - 8247037
Alignment:
Q  316 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 415  Q
    ||||||||||| |||||||| |||||||||||||||||  ||| ||||||||||||||  ||||||||||||||||||| ||||||||| |||| |||||    
T  8247180 actagttaaggtctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttctt 8247081  T
Q  416 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  8247080 ttggaatccttaaagagtgtcacgggggcactcgttaacaagac 8247037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 314 - 459
Target Start/End: Complemental strand, 3263862 - 3263717
Alignment:
Q  314 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 413  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||| |||    
T  3263862 gcactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttc 3263763  T
Q  414 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||  |||  |||||||||| | |||| ||||| |||||||||||    
T  3263762 ttttgaaattcttaaagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 19692840 - 19692696
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 411  Q
    |||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||| || |||||||||||||||| ||| ||||||| |||||| |    
T  19692840 ggcactggttaaggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttct 19692741  T
Q  412 tcttttagaatctttaaagagtgtctcggaggcactggttaacaa 456  Q
    ||||||  ||||||||||||||| | ||| | |||| ||||||||    
T  19692740 tcttttgaaatctttaaagagtgccccggggacactcgttaacaa 19692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 5356295 - 5356406
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||| || |||| |    
T  5356295 gttaaggtctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttcttattttgg 5356394  T
Q  420 aatctttaaaga 431  Q
     ||| |||||||    
T  5356395 tatccttaaaga 5356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 313 - 433
Target Start/End: Complemental strand, 35395304 - 35395184
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||| |||||  ||||| ||| | |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||| ||| ||    
T  35395304 ggcactcgttaacaccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttctt 35395205  T
Q  413 cttttagaatctttaaagagt 433  Q
    ||||| ||||| |||||||||    
T  35395204 cttttggaatccttaaagagt 35395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 314 - 459
Target Start/End: Complemental strand, 10051845 - 10051700
Alignment:
Q  314 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 413  Q
    |||||||||||| ||||||||| ||||||||| |||||||  ||| ||||||||||||||  |||  |||||||||||||| ||||||||| |||| |||    
T  10051845 gcactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttc 10051746  T
Q  414 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| |||| |||||||||| ||  | | |||| |||||||||||    
T  10051745 ttttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 459
Target Start/End: Complemental strand, 28793446 - 28793305
Alignment:
Q  318 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 417  Q
    |||||||||  ||||||| |||| ||||||| ||||||| |||||| |||||||||  ||||||||||||||||||| ||||||||| |||| |||||||    
T  28793446 tagttaaggtatttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttctttt 28793347  T
Q  418 agaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
     ||||| |||||||| |   |||| ||||| |||||||||||    
T  28793346 ggaatccttaaagagcgcaccggaagcactcgttaacaagac 28793305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 320 - 457
Target Start/End: Original strand, 1354345 - 1354481
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    |||||||||||||||  |||| ||||||||||||||| | ||||||||  ||    ||||||||||||| ||||| |||||||||||||| || ||||||    
T  1354345 gttaaggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttctttttttag 1354444  T
Q  420 aatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    ||| | | |||||||||||||||||||| |||||||||    
T  1354445 aat-tcttaagagtgtctcggaggcacttgttaacaag 1354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 313 - 431
Target Start/End: Complemental strand, 22473551 - 22473432
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttat 411  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||   |||  ||||||||||  ||| |||||||||||||| |    
T  22473551 ggcactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttct 22473452  T
Q  412 tcttttagaatctttaaaga 431  Q
    ||||||  |||| |||||||    
T  22473451 tcttttgaaatccttaaaga 22473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 21582463 - 21582367
Alignment:
Q  338 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    ||||||||||||||||| ||||| |||| || |||   ||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  21582463 taacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataatttattcttttggaatccttaaaaagtg 21582367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 452
Target Start/End: Complemental strand, 14042542 - 14042440
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 449  Q
    ||||| ||| |||||||||||| |  |||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || ||||| |||| |    
T  14042542 aaaatttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataatttattattttagaatctttaaagagtatcccggagacactcg 14042443  T
Q  450 tta 452  Q
    |||    
T  14042442 tta 14042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 433
Target Start/End: Complemental strand, 31889709 - 31889611
Alignment:
Q  336 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatctttaaagagt 433  Q
    |||||||| | |||||||||||||||||||||||||    ||| ||||||||| || ||| ||||||| |||||| ||||||||||||| |||||||||    
T  31889709 agtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaagagt 31889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 4725897 - 4725979
Alignment:
Q  376 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||| ||||||||| ||||||||||||||||||||||  |||| ||||| ||||| |||| | |||| |||||||||||    
T  4725897 aatcgaaatctttgacttt-ttataaaataatttattcttttgaaatccttaaacagtgtttcggggacactcgttaacaagac 4725979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 142350 - 142436
Alignment:
Q  318 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 404  Q
    |||||||| ||||||||  |||||||||||| ||| ||||||||||||||| |||   ||| ||||||||||| ||| |||||||||    
T  142350 tagttaagccctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 22871967 - 22871913
Alignment:
Q  382 aatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 436  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  22871967 aatatttgacttttttataaaatattttcttcttttagaatccttaaagagtgtc 22871913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 435
Target Start/End: Complemental strand, 3758279 - 3758194
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||| |||| || ||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||| ||| ||||||||||||    
T  3758279 aaaaaatgtatattcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgt 3758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 26663714 - 26663642
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 422  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26663714 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 26935309 - 26935237
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 422  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26935309 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 456
Target Start/End: Original strand, 14474998 - 14475133
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||| |||||||||||| |  ||||||| | ||||||||| |||||   ||| |||||||||||| || ||||| |||||||| |||||||| |    
T  14474998 ttaagaccttcaaatagtaactttttttgaaaatttatgtaatcaaagcatctgaaattgaaatatttgacatttttatagaataatttcttcttttaaa 14475097  T
Q  421 atctttaaagagtgtctcggaggcactggttaacaa 456  Q
    ||  || ||||| | | |||| ||||| ||||||||    
T  14475098 atgcttgaagagagccccggaagcacttgttaacaa 14475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 27650866 - 27650944
Alignment:
Q  381 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||| ||||| ||||| |||||||| || |||| |||| ||||||||||||  |||||| ||| |||||||||||    
T  27650866 aaatatttaacttttttatataataatttctttttttggaatgtttaaagagtgttccggaggtactcgttaacaagac 27650944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 37976497 - 37976444
Alignment:
Q  380 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 433  Q
    ||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||    
T  37976497 gaaatatttgatttttttatgaaataatttcttcttttagaatgtttaaagagt 37976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 12933381 - 12933327
Alignment:
Q  381 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||||||||||||| ||||||||||||||||| ||||  |||| || ||||||||    
T  12933381 aaatatttgactttcttataaaataatttattattttgaaatcgttgaagagtgt 12933327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 24241210 - 24241256
Alignment:
Q  376 aatcgaaatatttgactttattataaaataatttattcttttagaat 422  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  24241210 aatcgaaatatttgactttttattaaaataattttttcttttagaat 24241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 24241039 - 24241096
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 407  Q
    ||||||||| ||||||||| ||  | ||| ||||||||||||||| ||||||||||||    
T  24241039 aaaatatgtataatcaatgtattaaaaattgaaatatttgacttttttataaaataat 24241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 43145943 - 43145883
Alignment:
Q  312 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatc 372  Q
    |||||||| ||||| |||||||||||||| || |  ||||||| | |||||||||||||||    
T  43145943 aggcactatttaagacctttaaatagtaattttttttgaaaatttatgtaatcaatgcatc 43145883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 312 - 459
Target Start/End: Complemental strand, 8789973 - 8789826
Alignment:
Q  312 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 411  Q
    ||||||| ||||||| |||||||  |||||||| |||||||||||||||||||||||||||   |||| |||||||| ||||| |||||||||||||| |    
T  8789973 aggcactggttaaggtctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttct 8789874  T
Q  412 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||||||||||||||||||| || | | ||| |||||||||||    
T  8789873 tcttttagaatctttaaagagtgtcccgaaagtactcgttaacaagac 8789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 314 - 459
Target Start/End: Original strand, 44941072 - 44941216
Alignment:
Q  314 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 413  Q
    |||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||  ||||||||| ||| ||||| |||||| ||| ||| |||    
T  44941072 gcactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttc 44941171  T
Q  414 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||||| |||||||||||||| | |||||| |||||||||||    
T  44941172 ttttagaatccttaaagagtgtctcag-ggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 459
Target Start/End: Original strand, 20682990 - 20683133
Alignment:
Q  316 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 415  Q
    ||||||||| |  |||| || |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||  ||| |||||    
T  20682990 actagttaaagtttttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttctt 20683089  T
Q  416 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  20683090 ttggaatccttaaagagtgtcccgggggcactcgttaacaagac 20683133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 8773670 - 8773784
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||||||   |||| |||||||||||||| |||||||||||||| |||||||||    
T  8773670 gttaaggtctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttag 8773769  T
Q  420 aatctttaaagagtg 434  Q
    |||||||||||||||    
T  8773770 aatctttaaagagtg 8773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 4238341 - 4238438
Alignment:
Q  338 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 436  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  4238341 taacttat-atgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcttctttttgaatccttaaagagtgtc 4238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 436
Target Start/End: Original strand, 18053008 - 18053130
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||| |||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||| ||    
T  18053008 ggcattagttaaggcctttaaag-gtaatttatcatgaaagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttctt 18053106  T
Q  413 cttttagaatctttaaagagtgtc 436  Q
    |||||  |||| ||||||||||||    
T  18053107 cttttgaaatccttaaagagtgtc 18053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 42945012 - 42945125
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||  |  ||||||||||||||| ||| | |||||||||| | |||||||| |    
T  42945012 ttaaggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaa 42945111  T
Q  421 atctttaaagagtg 434  Q
    ||| ||||| ||||    
T  42945112 atccttaaaaagtg 42945125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 459
Target Start/End: Original strand, 6761751 - 6761862
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 447  Q
    ||||||| | |||||||||||||| |  ||| ||||||||||||||| ||||| ||| |||||||||||| ||||  |||||||||| |||||| |||||    
T  6761751 tgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcact 6761850  T
Q  448 ggttaacaagac 459  Q
     |||||||||||    
T  6761851 tgttaacaagac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 321 - 431
Target Start/End: Original strand, 2393038 - 2393148
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||||| ||||||||||   ||||||| ||||| ||||||||  | ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  2393038 ttaagacctttatatagtaactttgtatgaaaacatgtgaaatcaatgtcttgagaatcaaaatatttgacttttttataaattaatttcttcttttaga 2393137  T
Q  421 atctttaaaga 431  Q
    ||| |||||||    
T  2393138 atccttaaaga 2393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 34546265 - 34546379
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    |||||| || ||||||  ||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||| ||||||| |||||| ||| ||| |    
T  34546265 gttaagaccattaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttgg 34546364  T
Q  420 aatctttaaagagtg 434  Q
    |||| | ||||||||    
T  34546365 aatcctcaaagagtg 34546379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 321 - 447
Target Start/End: Complemental strand, 42967066 - 42966938
Alignment:
Q  321 ttaaggcctttaaatagtaa-cttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattctttta 418  Q
    ||||| ||||||||||||||  || |  ||||||| | |||||||||||||||| |||| ||||||||| || ||| |||| ||||||||| ||||||||    
T  42967066 ttaagacctttaaatagtaatttttttttgaaaatttatgtaatcaatgcatcgggaattgaaatatttaactttttttatgaaataatttcttctttta 42966967  T
Q  419 gaatctttaaagagtgtctcggaggcact 447  Q
    | ||  |||||||||||||||||||||||    
T  42966966 gtattcttaaagagtgtctcggaggcact 42966938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 1070639 - 1070568
Alignment:
Q  349 gaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaa 421  Q
    ||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| |||||||||||||    
T  1070639 gaaaatatgtgtaatcaat-cattgaaaatcaaaatattttactttattataaaataatatattcttttagaa 1070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 459
Target Start/End: Original strand, 5961954 - 5962101
Alignment:
Q  314 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataattta-t 411  Q
    |||||| ||||| ||||||||||||||||  |  ||||||| | |||||||||||||| |  ||| ||||||||| | ||| || ||  |||| |||  |    
T  5961954 gcactatttaagacctttaaatagtaactgtttttgaaaatttatgtaatcaatgcattggaaattgaaatatttaattttttttatggaatatttttct 5962053  T
Q  412 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||    
T  5962054 tcttttagaatgcttaaagagtgtctcggaggcactcgttaacaagac 5962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 10069312 - 10069229
Alignment:
Q  78 aaatatttaggttaacaaacgttaatggatctagtccaattatttaactagattcattaacttttgttgatttaaatgtctttt 161  Q
    |||||||||||| |||||| ||||||| ||||||||||||| |||||| |||| ||| ||||||| |||| | |||||||||||    
T  10069312 aaatatttaggtcaacaaaagttaatgtatctagtccaattttttaaccagatacataaacttttattgactcaaatgtctttt 10069229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 459
Target Start/End: Complemental strand, 3882700 - 3882586
Alignment:
Q  345 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggc 444  Q
    |||||||||| |||||||||||||||| || || ||||||||||||| || ||| | |||||||  || |||||||||  |||||||||| | ||  |||    
T  3882700 tcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggc 3882601  T
Q  445 actggttaacaagac 459  Q
    ||| |||||||||||    
T  3882600 actcgttaacaagac 3882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 433551 - 433643
Alignment:
Q  364 caatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt-ctcggaggcactggttaacaa 456  Q
    ||||||||| | |||| |||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||    
T  433551 caatgcatcaaaaatcaaaatatttaacttttttataaattaatttattcttttggaatccttaaagagtgtcctcgg-ggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 8898861 - 8898913
Alignment:
Q  383 atatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||    
T  8898861 atatttgactttattataaaataatttcttattttagaatcattaaagggtgt 8898913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 18227204 - 18227092
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    |||||||| | | |||||||||||| || |||||||||||||||||||  |  | |||||||  || ||||| ||| ||||||||||||  ||||| |||    
T  18227204 atgaaaatgtatttaatcaatgcattgaaaatcgaaatatttgacttttatgaagaataattacttattttataatgtttaaagagtgttccggagacac 18227105  T
Q  447 tggttaacaagac 459  Q
    | |||||||||||    
T  18227104 tcgttaacaagac 18227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 433
Target Start/End: Original strand, 2825983 - 2826066
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 433  Q
    ||||| |||||||||||||||| |  ||||||||||||| ||||| ||| |||||||||| || |||||| ||  |||||||||    
T  2825983 aaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 13442636 - 13442703
Alignment:
Q  380 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 447  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||   |||||||||||    
T  13442636 gaaatatttaactttttttataaaataatttattctttt-gaatctttaaagagtacttcggaggcact 13442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 35228816 - 35228732
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 431  Q
    ||||||||||||||||| |||||||    |||||||||||||||  || ||| |||||||||| |||||||  |||| |||||||    
T  35228816 atgaaaatatgtgtaataaatgcattagaaatcgaaatatttgatctttttagaaaataatttcttcttttgaaatccttaaaga 35228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 3199541 - 3199599
Alignment:
Q  376 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    |||| |||||||||| ||| |||||||||||||| || |||||||||  ||||||||||    
T  3199541 aatcaaaatatttgaattttttataaaataatttcttattttagaattattaaagagtg 3199599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 436
Target Start/End: Complemental strand, 7271880 - 7271769
Alignment:
Q  329 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac----tttattataaaataatttattcttttagaatct 424  Q
    |||||||  |||||| | |||||||||| |||||||||||||| |  |||  |||||||||||    ||| |||||| ||| ||| || ||||||||||     
T  7271880 tttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaatatttgacttttttttttataagatagtttctttttttagaatcc 7271781  T
Q  425 ttaaagagtgtc 436  Q
    ||||||||||||    
T  7271780 ttaaagagtgtc 7271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 14102297 - 14102435
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 419  Q
    |||||| || ||| ||||||||  | |||||||  ||||||||||||| || |  ||||||||||||| || ||| || | ||||||||| || |||| |    
T  14102297 ttaaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttgg 14102396  T
Q  420 aatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
     || |||||||||||   |||||||||| ||||||||||    
T  14102397 catgtttaaagagtgctccggaggcactcgttaacaaga 14102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 435
Target Start/End: Original strand, 31448315 - 31448400
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||||||| ||||| |||| ||||  |||| |||| ||| | ||| |||||||||||||| ||||||   ||||||||||||||||    
T  31448315 aaaatatgagtaattaatgtatcggaaatcaaaatttttaaattttttataaaataatttcttctttagaaatctttaaagagtgt 31448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 45212110 - 45212057
Alignment:
Q  376 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    |||| |||||||||| ||| ||||||||||||||||  |||||||||| |||||    
T  45212110 aatcaaaatatttgatttttttataaaataatttatctttttagaatccttaaa 45212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 33275918 - 33276005
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 435  Q
    |||||||| |||||| || ||| || || ||| ||||||||| ||||| ||| |||||||||| || |||||||||  |||||||||||    
T  33275918 atgaaaatgtgtgta-tctatgtattgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 313 - 433
Target Start/End: Original strand, 30412910 - 30413030
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||| ||    
T  30412910 ggcactggttaaggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttctt 30413009  T
Q  413 cttttagaatctttaaagagt 433  Q
    |||||  |||| |||||||||    
T  30413010 cttttgaaatccttaaagagt 30413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 459
Target Start/End: Complemental strand, 8170147 - 8170001
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||| ||||  |||| |||||||||||||| |||||||||||||| ||    
T  8170147 ggcactagttaaggtctttaaaaagtaacttatcatgaacatatgtataatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttctt 8170048  T
Q  413 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| ||||| |||||||||||  |||  | ||| |||||||||||    
T  8170047 cttttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 423
Target Start/End: Complemental strand, 48137899 - 48137789
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||    
T  48137899 ggcactagttaatgcttttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttctt 48137800  T
Q  413 cttttagaatc 423  Q
    ||||| |||||    
T  48137799 cttttggaatc 48137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 42493798 - 42493703
Alignment:
Q  340 acttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttattcttttagaatctttaaagagtg 434  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  42493798 acttatcatgaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtg 42493703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 328 - 459
Target Start/End: Complemental strand, 47507711 - 47507580
Alignment:
Q  328 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 427  Q
    |||||||| ||||||| ||||||||| ||||||||||||| |||||  ||| ||||| ||||| ||| ||||||||| |||| ||||||||||||| |||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  428 aagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||| | ||||| |||| |||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagac 47507580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 317 - 455
Target Start/End: Complemental strand, 38452283 - 38452146
Alignment:
Q  317 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 416  Q
    ||||||||||||||||||   ||| |||| |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||||| ||||||    
T  38452283 ctagttaaggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttcttt 38452184  T
Q  417 tagaatctttaaagagtgtctcggaggcactggttaaca 455  Q
    |  |||| ||||||| ||| |||| |||||| |||||||    
T  38452183 ttaaatccttaaagaatgt-tcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 429
Target Start/End: Complemental strand, 2964146 - 2964049
Alignment:
Q  332 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||| | ||| |||||||||||||| |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttcttcttttagaatctttaaa 2964049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 327 - 459
Target Start/End: Complemental strand, 16878809 - 16878677
Alignment:
Q  327 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 426  Q
    |||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||||| |  || | ||||||||    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttctctttattgaatcttt 16878710  T
Q  427 aaagagtgtctcggaggcactggttaacaagac 459  Q
    |||||||||| ||||  |||  |||||||||||    
T  16878709 aaagagtgtcccggaaacacctgttaacaagac 16878677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 44391426 - 44391537
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 419  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44391426 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 44391524  T
Q  420 aatctttaaagag 432  Q
    |||||||||||||    
T  44391525 aatctttaaagag 44391537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 46684550 - 46684626
Alignment:
Q  317 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt 393  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  46684550 ctagttaaggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 345 - 436
Target Start/End: Complemental strand, 5248179 - 5248088
Alignment:
Q  345 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 436  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||  |||| ||||||| ||||    
T  5248179 tcataaaaatatgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagaatgtc 5248088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 2741260 - 2741168
Alignment:
Q  342 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 434  Q
    |||| |||||||||||||||||||||||||||  |||| |||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||    
T  2741260 ttattatgaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaagagtg 2741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 436
Target Start/End: Original strand, 15034793 - 15034911
Alignment:
Q  318 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 416  Q
    |||||||||||||||||  ||||||||| ||||||||| |||||||| ||||||| |   |||||||||||||||||| |||||||||| ||| || | |    
T  15034793 tagttaaggcctttaaaaggtaacttattatgaaaatacgtgtaatcaaatgcattggatatcgaaatatttgacttt-ttataaaatattttcttttct 15034891  T
Q  417 tagaatctttaaagagtgtc 436  Q
    | ||||| ||||||||||||    
T  15034892 tggaatccttaaagagtgtc 15034911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 431
Target Start/End: Complemental strand, 43670517 - 43670409
Alignment:
Q  323 aaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 422  Q
    |||| |||||||| |||| ||||||| |||| || |||||||| |||||||| |||| |||| ||||| ||| ||||||||| |||| ||| |||| |||    
T  43670517 aaggtctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttcttcatttaaaat 43670418  T
Q  423 ctttaaaga 431  Q
    |||||||||    
T  43670417 ctttaaaga 43670409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 47305516 - 47305592
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaa-tcgaaatattt 388  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||    
T  47305516 ggcactagttaaggtgtttaaatggtaacttatcatgaaaatatgtgtaatctatggatcgaaaattcgaaatattt 47305592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 439
Target Start/End: Original strand, 676400 - 676488
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcg 439  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||| |||  ||||||||  || ||||||||| ||||||||||||||||    
T  676400 aaaatatgtgtaatcaatgcatttaaaatcgaaatatttaacttt-ttaataaataattacttattttagaatgtttaaagagtgtctcg 676488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 447
Target Start/End: Original strand, 37352436 - 37352535
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 447  Q
    ||||||| |||||||| ||||||| |  ||| ||||||||||||||| | ||  |||||||| || |||| ||||| ||||||| |||||||||||||||    
T  37352436 tgaaaatttgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaagaatgtctcggaggcact 37352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 442
Target Start/End: Original strand, 33887887 - 33887971
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggag 442  Q
    |||||||||||||| || ||| ||||||||||||||| ||| | |||||||  || |||| ||||  ||||||||||||||||||    
T  33887887 tgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgtctcggag 33887971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 459
Target Start/End: Original strand, 36015002 - 36015141
Alignment:
Q  315 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 414  Q
    |||||||||||| |||||||  ||||||||     |||||| |||||||||||  || || ||| || |||||||| ||| |||||||||||||| || |    
T  36015002 cactagttaaggtctttaaaaggtaactta-----aaaatacgtgtaatcaataaattgaaaattgacatatttgatttttttataaaataatttctttt 36015096  T
Q  415 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||  |||| ||||||| |||| ||||| || | |||||||||||    
T  36015097 tttgaaatccttaaagaatgtcccggagacattcgttaacaagac 36015141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 36285774 - 36285887
Alignment:
Q  319 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttt 417  Q
    ||||||| ||||||||  |||||||||||| ||||||  ||||||||||| ||||  |||| ||||||||||  ||| |||||||||  ||| |||||||    
T  36285774 agttaagtcctttaaaatgtaacttatcataaaaata--tgtaatcaatgtatcggaaatcaaaatatttgattttttttataaaatgctttcttctttt 36285871  T
Q  418 agaatctttaaagagt 433  Q
    | ||| ||||||||||    
T  36285872 aaaatttttaaagagt 36285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 45375399 - 45375483
Alignment:
Q  376 aatcgaaatatttgactttattataaaataa-tttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||| |||||||| ||||| |||||| |||| ||| ||||||||||||| |||||||||| | |||||||||| ||||| |||||    
T  45375399 aatcaaaatatttaacttttttataacataagtttcttcttttagaatccttaaagagtgccccggaggcactcgttaataagac 45375483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 15995971 - 15995924
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 394  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||    
T  15995971 atgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaacttt 15995924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 456
Target Start/End: Complemental strand, 35754126 - 35754017
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    ||||||| ||||||||| ||||||| || |||||||||| |||| | | |||||||||||||| || ||||  |||  ||||||||||| || ||| |||    
T  35754126 atgaaaacatgtgtaattaatgcattgaaaatcgaaatacttgattattttataaaataatttctttttttgaaattcttaaagagtgtttcagagacac 35754027  T
Q  447 tggttaacaa 456  Q
    | ||| ||||    
T  35754026 tcgttgacaa 35754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 44495314 - 44495238
Alignment:
Q  331 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 407  Q
    |||||| |||||| | || ||||||||||||||||||| ||  | ||||||||||||| | ||| ||||||||||||    
T  44495314 taaataataacttgttataaaaatatgtgtaatcaatgaattaaaaatcgaaatatttaaattttttataaaataat 44495238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 14574815 - 14574768
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 394  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  14574815 atgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaacttt 14574768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 465
Target Start/End: Original strand, 35599837 - 35599944
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    |||| ||||||||| || | | ||| ||||||| ||| ||| | ||||||||  |  ||||| || |||||||||| ||||||||||||| |||||||||    
T  35599837 tgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatctcggaggcactcgttaacaag 35599936  T
Q  458 acaattaa 465  Q
    || |||||    
T  35599937 accattaa 35599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 436
Target Start/End: Complemental strand, 31477175 - 31477085
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt-attcttttagaatctttaaagagtgtc 436  Q
    ||||||||||||||||||||||||| || |||| |  | |||||| || ||||| ||||||||  || |||||||||| ||||| ||||||    
T  31477175 atgaaaatatgtgtaatcaatgcattgaaaatcaatttttttgacgtttttatacaataatttcttttttttagaatccttaaatagtgtc 31477085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 460
Target Start/End: Original strand, 10031945 - 10032058
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    |||||||  |||||||||||||||| |  |||||||| |||| ||||| | | |||||||||  |  |||| ||||  |||||||||||| ||| |||||    
T  10031945 atgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcac 10032044  T
Q  447 tggttaacaagaca 460  Q
    | |||||| |||||    
T  10032045 tcgttaacgagaca 10032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 25120218 - 25120271
Alignment:
Q  384 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 437  Q
    ||||||||||| ||| |||||||||||||  |||  ||||||||||||||||||    
T  25120218 tatttgacttttttaaaaaataatttattaatttgaaatctttaaagagtgtct 25120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 27359466 - 27359398
Alignment:
Q  321 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt 388  Q
    ||||| ||||||||||||||||| |  ||||||| | ||||||||||||||| |  |||||||||||||    
T  27359466 ttaagacctttaaatagtaacttttttatgaaaacaagtgtaatcaatgcattggaaatcgaaatattt 27359398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 459
Target Start/End: Complemental strand, 31206426 - 31206280
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||| |     
T  31206426 ggcattagttaaggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttcta 31206327  T
Q  413 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| ||||| |||||||||  ||||  || ||| |||||||||||    
T  31206326 ctttttgaatccttaaagagtacctcgtggggactcgttaacaagac 31206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 38956992 - 38956884
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||   |||||||||    
T  38956992 ttaaggtctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaattacatcttttaga 38956893  T
Q  421 atctttaaa 429  Q
    ||| |||||    
T  38956892 atccttaaa 38956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 436
Target Start/End: Original strand, 5217747 - 5217869
Alignment:
Q  312 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 411  Q
    ||||||||||||||  ||||| || |||| ||||||| |||||||||||||||||| |||||  ||||||||||||||||||| ||||||||| ||||||    
T  5217747 aggcactagttaagatctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcatttat 5217846  T
Q  412 tcttttagaatctttaaagagtgtc 436  Q
      |||| ||||| ||||||||||||    
T  5217847 --tttttgaatccttaaagagtgtc 5217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 329 - 434
Target Start/End: Original strand, 45368729 - 45368834
Alignment:
Q  329 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 428  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  429 agagtg 434  Q
    ||||||    
T  45368829 agagtg 45368834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 433
Target Start/End: Original strand, 5020051 - 5020162
Alignment:
Q  320 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 419  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||| ||||  ||| ||||| ||||||||| ||||||||| |||| |||||||||    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaat--gtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttag 5020148  T
Q  420 aatctttaaagagt 433  Q
    |||| |||||||||    
T  5020149 aatccttaaagagt 5020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 20169716 - 20169827
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 419  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  20169716 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 20169814  T
Q  420 aatctttaaagag 432  Q
    |||||||||||||    
T  20169815 aatctttaaagag 20169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 459
Target Start/End: Complemental strand, 9633040 - 9632898
Alignment:
Q  318 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta--ttctt 415  Q
    ||||||||| |||||||| | || |||| ||||||||||||||||||||||||||   |||| |||||||||||||| || || |||  ||||  || ||    
T  9633040 tagttaaggtctttaaatggcaatttattatgaaaatatgtgtaatcaatgcatctgaaatcaaaatatttgacttt-ttttataattttttattttttt 9632942  T
Q  416 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||  ||||||||||||||| | ||||| |||| |||||||||||    
T  9632941 ttgaaatctttaaagagtgacccggagacacttgttaacaagac 9632898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 462
Target Start/End: Complemental strand, 33636767 - 33636685
Alignment:
Q  380 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaat 462  Q
    |||| |||||||||| |||| ||||||||| | ||||||||||  ||||||||||||||||  ||||| ||||| ||||||||    
T  33636767 gaaacatttgacttttttatgaaataatttctccttttagaatgcttaaagagtgtctcgggcgcactcgttaataagacaat 33636685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 456
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  330 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    ||||||||||| || | |||||||| |||||| ||||||||| || ||| ||| ||||||||||| ||| | |||||||| ||  | | ||||  |||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  430 gagtgtctcggaggcactggttaacaa 456  Q
    ||||||||||  |||||| ||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 7044329 - 7044442
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||||| ||| ||||||   ||||||| | |||||||||| || |  | ||||||||| ||||||||| | ||||| |||||| ||||||||||    
T  7044329 ttaagacctttatataataactttgtatgaaaacacgtgtaatcaaagccttaaaaatcgaaatgtttgactttttaataaattaatttcttcttttaga 7044428  T
Q  421 atctttaaagagtg 434  Q
    ||| ||||||||||    
T  7044429 atccttaaagagtg 7044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 459
Target Start/End: Original strand, 24103087 - 24103187
Alignment:
Q  359 gtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    ||||||| |||||||  |||||||| ||||||| || | | |||||||||| || |||||||||  ||||||||||||||||| ||| | |||||| |||    
T  24103087 gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgcttaaagagtgtctcggaagcaatcgttaacgaga 24103186  T
Q  459 c 459  Q
    |    
T  24103187 c 24103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 459
Target Start/End: Original strand, 39932721 - 39932813
Alignment:
Q  367 tgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||| || ||| ||||||||||||||| ||||  ||| |||  |||||||||||| |||||||||||| ||||||| | | |||||||||||    
T  39932721 tgcatggaaaattgaaatatttgacttttttatggaattattacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 459
Target Start/End: Original strand, 10335020 - 10335159
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttag 419  Q
    ||||||||||||||| |||| || |  ||||||| ||| |||| ||||||| || |||   ||||||||||||| || ||| |||||||||||||||| |    
T  10335020 ttaaggcctttaaattgtaattttttgtgaaaatttgtataattaatgcattgaaaattataatatttgactttttttatagaataatttattcttttgg 10335119  T
Q  420 aatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    |||  ||||||||||   || | ||||| |||||||||||    
T  10335120 aattcttaaagagtgctccgaatgcactcgttaacaagac 10335159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 36819755 - 36819793
Alignment:
Q  396 ttataaaataatttattcttttagaatctttaaagagtg 434  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36819755 ttataaaataattttttcttttagaatctttaaagagtg 36819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 37564393 - 37564468
Alignment:
Q  384 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||||| ||| | |||||||| ||  ||||| || ||||||||||||| | |||||||| |||||||||||    
T  37564393 tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 2124141 - 2124203
Alignment:
Q  396 ttataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||   |||| ||||||||||    
T  2124141 ttatagaataatttcttcttttagaatgtttaaagaatgtctcgggaacactcgttaacaaga 2124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 5968377 - 5968437
Alignment:
Q  399 taaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 459  Q
    ||||||||||  || ||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  5968377 taaaataattgcttgttttagaatgtttaaagagtgccctggaggcactcgttaacaagac 5968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 22209488 - 22209376
Alignment:
Q  347 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 446  Q
    |||||||||| |||||||||||  | |  |||| |||||||| ||||| |||   |||||||  |||||||| |||  |||||||||||| ||||| |||    
T  22209488 atgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtgtcccggagacac 22209389  T
Q  447 tggttaacaagac 459  Q
    | ||||| |||||    
T  22209388 ttgttaataagac 22209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 12383008 - 12383129
Alignment:
Q  313 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 412  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||  |||| |||||||| ||||| |||||||||||||| |     
T  12383008 ggcactagttaagtcctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctc 12383107  T
Q  413 cttttagaatctttaaagagtg 434  Q
    |||||  |||  ||||||||||    
T  12383108 cttttgaaattcttaaagagtg 12383129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 16442188 - 16442075
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | || |||| |||| ||||||||| ||||||| |||||||||||||||||    
T  16442188 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatattttgaaaatcaaaatgtttgacttttttataaactaatttattcttttaga 16442089  T
Q  421 atctttaaagagtg 434  Q
    ||||||||||||||    
T  16442088 atctttaaagagtg 16442075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 431
Target Start/End: Complemental strand, 8176419 - 8176324
Alignment:
Q  336 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 431  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||| ||| | |||| ||||||||||||| |||||||    
T  8176419 agtaacttattatgaaaatatgtgtaattaatgcatcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaaga 8176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 433
Target Start/End: Complemental strand, 12307904 - 12307821
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 433  Q
    |||||||||||||| |||| || || |||  |||||||||||||| |||||||||||||| |||||||  |||| |||||||||    
T  12307904 aaaatatgtgtaattaatgtattgaaaattaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 459
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  330 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 429  Q
    |||||||||||||| | || ||||||||||||||||||||||    |||  ||||| || ||||| |||||||||||||| |||||||  |||  |||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  430 gagtgtctcggaggcactggttaacaagac 459  Q
    ||||| | ||||  |||| |||||||||||    
T  31702847 gagtgccccgga--cactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 7465558 - 7465451
Alignment:
Q  348 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 447  Q
    ||||||| | ||||||||||||||||  ||| ||||||||||||||| ||||  || ||||| |||||| |||||| ||||| |||| | ||| ||||||    
T  7465558 tgaaaatttatgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtg-cccgggggcact 7465460  T
Q  448 ggttaacaa 456  Q
     ||||||||    
T  7465459 cgttaacaa 7465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 22695473 - 22695549
Alignment:
Q  315 cactagttaaggcctttaaatagtaacttatcatgaaaa-tatgtgtaatcaatgcatcgagaatcgaaatatttga 390  Q
    |||| |||||||| ||||||| ||||||| | || |||| ||||||||||||||||||||| ||| |||||||||||    
T  22695473 cactcgttaaggcttttaaatggtaactttttattaaaaatatgtgtaatcaatgcatcgaaaattgaaatatttga 22695549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 22696000 - 22696071
Alignment:
Q  387 ttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 458  Q
    |||| ||| |||||||||||||| ||||||| ||||| ||||||||||  || |||||||| ||||||||||    
T  22696000 ttgatttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaaga 22696071  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 430
Target Start/End: Complemental strand, 35241509 - 35241410
Alignment:
Q  332 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt-tattataaaataatttattcttttagaatctttaaag 430  Q
    |||| |||||||||||| ||||||||| |||||||||||||   |||| |||||||| | || | |||||||||||||| || ||||| |||| ||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttctttttttaaaatccttaaag 35241410  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 6048268 - 6048381
Alignment:
Q  321 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 420  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | |  |||  |||| ||| ||||| ||||||| |||||| ||||||||||    
T  6048268 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatatcttggaaattaaaatgtttcacttttttataaattaatttcttcttttaga 6048367  T
Q  421 atctttaaagagtg 434  Q
    || |||||||||||    
T  6048368 atttttaaagagtg 6048381  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 32045160 - 32045211
Alignment:
Q  132 cattaacttttgttgatttaaatgtctttttataaaaaggatcggagggagta 184  Q
    |||||||||||||||| |||||| || ||||||||| ||||||||||||||||    
T  32045160 cattaacttttgttgagttaaatatc-ttttataaataggatcggagggagta 32045211  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 431
Target Start/End: Complemental strand, 26311889 - 26311807
Alignment:
Q  350 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgact-ttattataaaataatttattcttttagaatctttaaaga 431  Q
    |||||||||||||| |||| || || |||| |||||||| ||  || ||||||| ||||||||||||| |||||| |||||||    
T  26311889 aaaatatgtgtaattaatgtattgaaaatcaaaatatttaaccatttttataaattaatttattctttcagaatccttaaaga 26311807  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 459
Target Start/End: Complemental strand, 30509387 - 30509286
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    |||||||||||||| || ||||||||| ||||| ||| ||| | |||||||  || |||| | ||  |||||||||||  ||||| |||| |||||||||    
T  30509387 tgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacactcgttaacaag 30509288  T
Q  458 ac 459  Q
    ||    
T  30509287 ac 30509286  T

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Target: scaffold0246 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 18144 - 18245
Alignment:
Q  358 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 457  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  18144 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 18243  T
Q  458 ac 459  Q
    ||    
T  18244 ac 18245  T

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