View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7310_low_7 (Length: 485)

Name: NF7310_low_7
Description: NF7310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7310_low_7
NF7310_low_7
[»] chr4 (2 HSPs)
chr4 (337-466)||(5473264-5473393)
chr4 (416-465)||(33529037-33529086)
[»] chr7 (1 HSPs)
chr7 (339-466)||(21269108-21269234)
[»] chr5 (1 HSPs)
chr5 (329-466)||(43549758-43549892)
[»] chr2 (4 HSPs)
chr2 (329-466)||(27763909-27764043)
chr2 (416-466)||(32245911-32245961)
chr2 (395-466)||(5701033-5701101)
chr2 (416-463)||(19384262-19384309)
[»] chr1 (2 HSPs)
chr1 (328-466)||(49936615-49936750)
chr1 (5-82)||(6087973-6088053)
[»] chr8 (1 HSPs)
chr8 (418-466)||(33803661-33803709)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 337 - 466
Target Start/End: Original strand, 5473264 - 5473393
Alignment:
Q  337 gctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctctattgtta 436  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5473264 gctatatagtacgggaattattttcacgggaaatttacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtgtctattgtta 5473363  T
Q  437 tgcaattcagccaaagaaaaaggtggtcaa 466  Q
    ||||||||||||||||||||||||||||||    
T  5473364 tgcaattcagccaaagaaaaaggtggtcaa 5473393  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 33529086 - 33529037
Alignment:
Q  416 tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtca 465  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  33529086 tgcactatgtcttcattgttatgcaattcaaccaaagaaaaaggtggtca 33529037  T

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Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 21269108 - 21269234
Alignment:
Q  339 tatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctctattgttatg 438  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21269108 tatatagtacgggaattatttttacgg-aaattcacgaacgcttagcaacctgatcactgtttctattgttatgcagtgcactatgtctctattgttatg 21269206  T
Q  439 caattcagccaaagaaaaaggtggtcaa 466  Q
    ||||| ||||||||||||||||||||||    
T  21269207 caatttagccaaagaaaaaggtggtcaa 21269234  T

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Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 43549892 - 43549758
Alignment:
Q  329 agagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctc 428  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43549892 agagaagtgctatatagtacgggaattattttcacgggaaattcacggacgcttagcaatctgatcacggtttctattgttatgcagtgcactatgtctc 43549793  T
Q  429 tattgttatgcaattcagccaaagaaaaaggtggtcaa 466  Q
    ||   ||||||||||||||||||||||||| |||||||    
T  43549792 ta---ttatgcaattcagccaaagaaaaagctggtcaa 43549758  T

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Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 27764043 - 27763909
Alignment:
Q  329 agagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctc 428  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  27764043 agagaagtgctatatagtacgggaattattttcacgggaaattcacggacgcttagcaatctgatcacggtttctattgttatgcagtgcactatatctc 27763944  T
Q  429 tattgttatgcaattcagccaaagaaaaaggtggtcaa 466  Q
    ||   |||||||||||||||||||||||||||||||||    
T  27763943 ta---ttatgcaattcagccaaagaaaaaggtggtcaa 27763909  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 32245911 - 32245961
Alignment:
Q  416 tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaa 466  Q
    ||||||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  32245911 tgcactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaa 32245961  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 5701101 - 5701033
Alignment:
Q  395 acggtttctattgttatgcagtgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaa 466  Q
    ||||| ||||||||||||||   ||||||||||  |||||||||||||||| | |||||||||| |||||||    
T  5701101 acggtatctattgttatgca---cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaa 5701033  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 19384262 - 19384309
Alignment:
Q  416 tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggt 463  Q
    ||||||||||||  |||||||||||||||| ||||| |||||||||||    
T  19384262 tgcactatgtcttcattgttatgcaattcaaccaaataaaaaggtggt 19384309  T

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Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 328 - 466
Target Start/End: Original strand, 49936615 - 49936750
Alignment:
Q  328 tagagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtct 427  Q
    |||||||| | |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49936615 tagagaagtgatatataatacaggaattattttcacgggaaattcacggacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtct 49936714  T
Q  428 ctattgttatgcaattcagccaaagaaaaaggtggtcaa 466  Q
    |||   |||||||||||||||||||||||||||||||||    
T  49936715 cta---ttatgcaattcagccaaagaaaaaggtggtcaa 49936750  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 6088053 - 6087973
Alignment:
Q  5 gatatggttgggattatattgttcttcaa---catgtttttatgctattttatgcttaaataccacaaaattgtggtgtta 82  Q
    ||||||||||||||||||||||| |||     ||||||||||||||| ||||| |||||||| | ||||| ||||||||||    
T  6088053 gatatggttgggattatattgttgttcttttgcatgtttttatgctactttatacttaaataacgcaaaagtgtggtgtta 6087973  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 33803709 - 33803661
Alignment:
Q  418 cactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaa 466  Q
    ||||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  33803709 cactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaa 33803661  T

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